Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL512361.1-201ENST00000554200 418 ntBASIC18.61■□□□□ 0.57
HMGB1P09429 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB1P09429 AC010336.2-201ENST00000564226 506 ntBASIC18.61■□□□□ 0.57
HMGB1P09429 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.61■□□□□ 0.57
HMGB1P09429 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.61■□□□□ 0.57
HMGB1P09429 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGB1P09429 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB1P09429 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HMGB1P09429 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
HMGB1P09429 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
HMGB1P09429 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGB1P09429 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGB1P09429 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB1P09429 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 SDHAP3-202ENST00000515467 728 ntBASIC18.6■□□□□ 0.57
HMGB1P09429 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 ZNF890P-202ENST00000530367 1156 ntBASIC18.6■□□□□ 0.57
HMGB1P09429 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGB1P09429 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGB1P09429 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 AC074044.1-201ENST00000609673 707 ntBASIC18.6■□□□□ 0.57
HMGB1P09429 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 AC023157.3-201ENST00000619086 2088 ntBASIC18.6■□□□□ 0.57
HMGB1P09429 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB1P09429 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HMGB1P09429 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB1P09429 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB1P09429 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 AC006486.2-201ENST00000624246 2199 ntBASIC18.59■□□□□ 0.57
HMGB1P09429 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.59■□□□□ 0.57
HMGB1P09429 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 C18orf15-201ENST00000623680 2534 ntBASIC18.59■□□□□ 0.57
HMGB1P09429 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.59■□□□□ 0.57
HMGB1P09429 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB1P09429 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB1P09429 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB1P09429 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms