Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 MTHFR-210ENST00000641407 2387 ntBASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AMT-224ENST00000635808 1610 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AC010654.1-201ENST00000615722 808 ntBASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 PTPRVP-205ENST00000641549 5067 ntBASIC9.82□□□□□ -0.84
LINC00643Q86TS7 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 KRT8P49-201ENST00000604166 1432 ntBASIC9.82□□□□□ -0.84
LINC00643Q86TS7 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
LINC00643Q86TS7 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC9.81□□□□□ -0.84
LINC00643Q86TS7 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC9.81□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms