RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
COL3A1-201ENST00000304636 NISCHQ9Y2I1 1504 aa21.2■□□□□ 0.98
COL3A1-201ENST00000304636 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
COL3A1-201ENST00000304636 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
COL3A1-201ENST00000304636 PELP1Q8IZL8 1130 aaKnown RBP20.39■□□□□ 0.85
COL3A1-201ENST00000304636 PCGF6Q9BYE7 350 aa20.14■□□□□ 0.81
COL3A1-201ENST00000304636 EHMT2Q96KQ7 1210 aa20.11■□□□□ 0.81
COL3A1-201ENST00000304636 ZEB1P37275 1124 aaPredicted RBP19.95■□□□□ 0.78
COL3A1-201ENST00000304636 CENPBP07199 599 aaPredicted RBP19.87■□□□□ 0.77
COL3A1-201ENST00000304636 APLP2Q06481 763 aa19.85■□□□□ 0.77
COL3A1-201ENST00000304636 FAM9AQ8IZU1 332 aaPredicted RBP19.75■□□□□ 0.75
COL3A1-201ENST00000304636 MYT1Q01538 1121 aa19.72■□□□□ 0.75
COL3A1-201ENST00000304636 CCER1Q8TC90 406 aaPredicted RBP19.59■□□□□ 0.73
COL3A1-201ENST00000304636 TTBK1Q5TCY1 1321 aaPredicted RBP19.55■□□□□ 0.72
COL3A1-201ENST00000304636 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
COL3A1-201ENST00000304636 HRCP23327 699 aa19.48■□□□□ 0.71
COL3A1-201ENST00000304636 ERICH6Q7L0X2 663 aa19.46■□□□□ 0.71
COL3A1-201ENST00000304636 TRIM26Q12899 539 aaPredicted RBP19.36■□□□□ 0.69
COL3A1-201ENST00000304636 YTHDC1Q96MU7 727 aaKnown RBP19.24■□□□□ 0.67
COL3A1-201ENST00000304636 NEFLP07196 543 aa19.2■□□□□ 0.66
COL3A1-201ENST00000304636 UBTFP17480 764 aaKnown RBP19.14■□□□□ 0.65
COL3A1-201ENST00000304636 RANGAP1P46060 587 aaPredicted RBP19.11■□□□□ 0.65
COL3A1-201ENST00000304636 CHIC1Q5VXU3 224 aa19.03■□□□□ 0.64
COL3A1-201ENST00000304636 PPARGC1BQ86YN6 1023 aaKnown RBP19■□□□□ 0.63
COL3A1-201ENST00000304636 LOC105371045A0A1W2PR82 267 aa18.93■□□□□ 0.62
COL3A1-201ENST00000304636 ATP1B4Q9UN42 357 aaPredicted RBP18.88■□□□□ 0.61
COL3A1-201ENST00000304636 DIEXFQ68CQ4 756 aaKnown RBP18.72■□□□□ 0.59
COL3A1-201ENST00000304636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.62■□□□□ 0.57
COL3A1-201ENST00000304636 HNRNPUL2Q1KMD3 747 aaKnown RBP18.61■□□□□ 0.57
COL3A1-201ENST00000304636 ITGAEP38570 1179 aa18.51■□□□□ 0.55
COL3A1-201ENST00000304636 DAXXQ9UER7 740 aaPredicted RBP18.51■□□□□ 0.55
COL3A1-201ENST00000304636 GTF3C3Q9Y5Q9 886 aa18.51■□□□□ 0.55
COL3A1-201ENST00000304636 ACIN1Q9UKV3 1341 aaKnown RBP18.34■□□□□ 0.53
COL3A1-201ENST00000304636 RTL5Q5HYW3 569 aaPredicted RBP18.34■□□□□ 0.53
COL3A1-201ENST00000304636 POLR3GLQ9BT43 218 aa18.31■□□□□ 0.52
COL3A1-201ENST00000304636 ZNF316A6NFI3 1004 aaPredicted RBP18.28■□□□□ 0.52
COL3A1-201ENST00000304636 BCANQ96GW7 911 aa18.17■□□□□ 0.5
COL3A1-201ENST00000304636 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
COL3A1-201ENST00000304636 CDK11AQ9UQ88 783 aaPredicted RBP18.12■□□□□ 0.49
COL3A1-201ENST00000304636 DCAF1Q9Y4B6 1507 aa18.11■□□□□ 0.49
COL3A1-201ENST00000304636 ANP32CO43423 234 aa18.1■□□□□ 0.49
COL3A1-201ENST00000304636 FAM50AQ14320 339 aaKnown RBP18.08■□□□□ 0.48
COL3A1-201ENST00000304636 CLSPNQ9HAW4 1339 aa18.05■□□□□ 0.48
COL3A1-201ENST00000304636 NEUROD1Q13562 356 aa18.05■□□□□ 0.48
COL3A1-201ENST00000304636 TRIM52Q96A61 297 aa17.93■□□□□ 0.46
COL3A1-201ENST00000304636 MYT1LQ9UL68 1186 aa17.88■□□□□ 0.45
COL3A1-201ENST00000304636 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
COL3A1-201ENST00000304636 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
COL3A1-201ENST00000304636 ANP32AP39687 249 aaKnown RBP17.81■□□□□ 0.44
COL3A1-201ENST00000304636 FKBP8Q14318 412 aa17.78■□□□□ 0.44
COL3A1-201ENST00000304636 SLC4A1APQ9BWU0 796 aaKnown RBP17.76■□□□□ 0.43
COL3A1-201ENST00000304636 ZNF326Q5BKZ1 582 aaKnown RBP17.69■□□□□ 0.42
COL3A1-201ENST00000304636 ZCCHC6Q5VYS8 1495 aaKnown RBP17.65■□□□□ 0.42
COL3A1-201ENST00000304636 ABCC9O60706 1549 aa17.62■□□□□ 0.41
COL3A1-201ENST00000304636 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL3A1-201ENST00000304636 MIER1Q8N108 512 aa17.58■□□□□ 0.41
COL3A1-201ENST00000304636 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
COL3A1-201ENST00000304636 HNRNPUQ00839 825 aaKnown RBP eCLIP17.57■□□□□ 0.4
COL3A1-201ENST00000304636 NPM2Q86SE8 214 aaKnown RBP17.57■□□□□ 0.4
COL3A1-201ENST00000304636 DDX10Q13206 875 aaKnown RBP17.57■□□□□ 0.4
COL3A1-201ENST00000304636 TONSLQ96HA7 1378 aa17.56■□□□□ 0.4
COL3A1-201ENST00000304636 CANXP27824 592 aaKnown RBP17.55■□□□□ 0.4
COL3A1-201ENST00000304636 ZBTB47Q9UFB7 747 aaPredicted RBP17.53■□□□□ 0.4
COL3A1-201ENST00000304636 CCDC180Q9P1Z9 1646 aa17.53■□□□□ 0.4
COL3A1-201ENST00000304636 P3H3Q8IVL6 736 aa17.48■□□□□ 0.39
COL3A1-201ENST00000304636 EIF5BO60841 1220 aaKnown RBP17.46■□□□□ 0.39
COL3A1-201ENST00000304636 FAM9BQ8IZU0 186 aa17.44■□□□□ 0.38
COL3A1-201ENST00000304636 CCDC136Q96JN2 1154 aa17.41■□□□□ 0.38
COL3A1-201ENST00000304636 NBR1Q14596 966 aa17.39■□□□□ 0.37
COL3A1-201ENST00000304636 ANP32EQ9BTT0 268 aa17.39■□□□□ 0.37
COL3A1-201ENST00000304636 SCRIBQ14160 1630 aa17.39■□□□□ 0.37
COL3A1-201ENST00000304636 ANP32BQ92688 251 aaKnown RBP17.34■□□□□ 0.37
COL3A1-201ENST00000304636 GLIPR1L2Q4G1C9 344 aa17.34■□□□□ 0.37
COL3A1-201ENST00000304636 UPF2Q9HAU5 1272 aaKnown RBP17.33■□□□□ 0.37
COL3A1-201ENST00000304636 NEFMP07197 916 aa17.32■□□□□ 0.36
COL3A1-201ENST00000304636 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
COL3A1-201ENST00000304636 CLIP1P30622 1438 aa17.29■□□□□ 0.36
COL3A1-201ENST00000304636 TMC1Q8TDI8 760 aa17.29■□□□□ 0.36
COL3A1-201ENST00000304636 ARID3CA6NKF2 412 aa17.26■□□□□ 0.35
COL3A1-201ENST00000304636 CEP162Q5TB80 1403 aa17.26■□□□□ 0.35
COL3A1-201ENST00000304636 IRX6P78412 446 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-201ENST00000304636 ZNF777Q9ULD5 760 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-201ENST00000304636 EEA1Q15075 1411 aa17.25■□□□□ 0.35
COL3A1-201ENST00000304636 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
COL3A1-201ENST00000304636 HSP90AA1P07900 732 aaKnown RBP17.23■□□□□ 0.35
COL3A1-201ENST00000304636 BCL11AQ9H165 835 aa17.23■□□□□ 0.35
COL3A1-201ENST00000304636 GOLGA3Q08378 1498 aa17.2■□□□□ 0.34
COL3A1-201ENST00000304636 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
COL3A1-201ENST00000304636 FBLN2P98095 1184 aa17.19■□□□□ 0.34
COL3A1-201ENST00000304636 EIF4G2P78344 907 aaKnown RBP eCLIP17.17■□□□□ 0.34
COL3A1-201ENST00000304636 HIRIP3Q9BW71 556 aaPredicted RBP17.17■□□□□ 0.34
COL3A1-201ENST00000304636 DDRGK1Q96HY6 314 aa17.16■□□□□ 0.34
COL3A1-201ENST00000304636 SUPT16HQ9Y5B9 1047 aaKnown RBP17.16■□□□□ 0.34
COL3A1-201ENST00000304636 RSF1Q96T23 1441 aaPredicted RBP17.15■□□□□ 0.34
COL3A1-201ENST00000304636 CHIC2Q9UKJ5 165 aa17.14■□□□□ 0.33
COL3A1-201ENST00000304636 TNIKQ9UKE5 1360 aa17.14■□□□□ 0.33
COL3A1-201ENST00000304636 WDR43Q15061 677 aaKnown RBP eCLIP17.1■□□□□ 0.33
COL3A1-201ENST00000304636 MTUS2Q5JR59 1369 aa17.1■□□□□ 0.33
COL3A1-201ENST00000304636 SLC24A1O60721 1099 aa17.07■□□□□ 0.32
COL3A1-201ENST00000304636 PPP4R2Q9NY27 417 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms