Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.44■□□□□ 0.06
YBX1P67809 SPDYE17-201ENST00000412399 783 ntBASIC15.44■□□□□ 0.06
YBX1P67809 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
YBX1P67809 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
YBX1P67809 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.44■□□□□ 0.06
YBX1P67809 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.44■□□□□ 0.06
YBX1P67809 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.44■□□□□ 0.06
YBX1P67809 AC026979.3-201ENST00000607315 403 ntBASIC15.44■□□□□ 0.06
YBX1P67809 TEX28P1-201ENST00000613479 1221 ntBASIC15.44■□□□□ 0.06
YBX1P67809 TEX28P2-201ENST00000617764 1221 ntBASIC15.44■□□□□ 0.06
YBX1P67809 AC073592.8-201ENST00000624126 511 ntBASIC15.44■□□□□ 0.06
YBX1P67809 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.44■□□□□ 0.06
YBX1P67809 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 SNX18-202ENST00000343017 3140 ntBASIC15.44■□□□□ 0.06
YBX1P67809 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 CETN4P-206ENST00000642099 2168 ntBASIC15.43■□□□□ 0.06
YBX1P67809 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
YBX1P67809 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
YBX1P67809 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.43■□□□□ 0.06
YBX1P67809 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.43■□□□□ 0.06
YBX1P67809 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
YBX1P67809 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 AC004987.2-201ENST00000395959 1148 ntBASIC15.43■□□□□ 0.06
YBX1P67809 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 AZGP1P1-201ENST00000411909 902 ntBASIC15.43■□□□□ 0.06
YBX1P67809 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 HMGN1P19-201ENST00000436976 333 ntBASIC15.43■□□□□ 0.06
YBX1P67809 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.43■□□□□ 0.06
YBX1P67809 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 IGHV3-42-201ENST00000520410 361 ntBASIC15.43■□□□□ 0.06
YBX1P67809 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
YBX1P67809 AC243562.2-201ENST00000561247 970 ntBASIC15.43■□□□□ 0.06
YBX1P67809 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.43■□□□□ 0.06
YBX1P67809 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
YBX1P67809 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 AL590560.3-201ENST00000623350 461 ntBASIC15.43■□□□□ 0.06
YBX1P67809 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 REXO1L1P-202ENST00000608646 1974 ntBASIC15.43■□□□□ 0.06
YBX1P67809 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
YBX1P67809 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.43■□□□□ 0.06
YBX1P67809 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
YBX1P67809 AC100757.3-201ENST00000622361 1406 ntBASIC15.43■□□□□ 0.06
YBX1P67809 AC092127.1-201ENST00000567093 3455 ntBASIC15.42■□□□□ 0.06
YBX1P67809 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
YBX1P67809 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.42■□□□□ 0.06
YBX1P67809 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.42■□□□□ 0.06
YBX1P67809 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.42■□□□□ 0.06
YBX1P67809 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
YBX1P67809 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
YBX1P67809 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
YBX1P67809 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
YBX1P67809 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
YBX1P67809 AP001282.1-201ENST00000531301 1499 ntBASIC15.42■□□□□ 0.06
YBX1P67809 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
YBX1P67809 KRT8P12-202ENST00000472924 1397 ntBASIC15.42■□□□□ 0.06
YBX1P67809 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
YBX1P67809 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms