Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC069262.1-201ENST00000539058 672 ntBASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AL079307.3-201ENST00000556114 283 ntBASIC14.39□□□□□ -0.11
ATG4DQ86TL0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AL607033.1-201ENST00000623900 1599 ntBASIC14.39□□□□□ -0.11
ATG4DQ86TL0 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 HYMAI-201ENST00000635591 3347 ntBASIC14.38□□□□□ -0.11
ATG4DQ86TL0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AC051619.7-201ENST00000568314 623 ntBASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 TUBB3P1-201ENST00000405796 1332 ntBASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4DQ86TL0 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4DQ86TL0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms