Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.41■□□□□ 0.22
NEK3P51956 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.41■□□□□ 0.22
NEK3P51956 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.41■□□□□ 0.22
NEK3P51956 AJ011932.1-201ENST00000621707 465 ntBASIC16.41■□□□□ 0.22
NEK3P51956 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.41■□□□□ 0.22
NEK3P51956 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
NEK3P51956 NFIC-211ENST00000641145 8399 ntBASIC16.41■□□□□ 0.22
NEK3P51956 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.41■□□□□ 0.22
NEK3P51956 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NEK3P51956 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 AC092580.3-201ENST00000430932 139 ntBASIC16.4■□□□□ 0.22
NEK3P51956 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.4■□□□□ 0.22
NEK3P51956 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.4■□□□□ 0.22
NEK3P51956 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
NEK3P51956 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NEK3P51956 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.4■□□□□ 0.22
NEK3P51956 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
NEK3P51956 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.39■□□□□ 0.21
NEK3P51956 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
NEK3P51956 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
NEK3P51956 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 AL512638.1-201ENST00000457493 794 ntBASIC16.39■□□□□ 0.21
NEK3P51956 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.39■□□□□ 0.21
NEK3P51956 AC027369.6-201ENST00000525520 931 ntBASIC16.39■□□□□ 0.21
NEK3P51956 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.39■□□□□ 0.21
NEK3P51956 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.39■□□□□ 0.21
NEK3P51956 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.39■□□□□ 0.21
NEK3P51956 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 SPDYE12P-201ENST00000618416 771 ntBASIC16.39■□□□□ 0.21
NEK3P51956 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.39■□□□□ 0.21
NEK3P51956 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.39■□□□□ 0.21
NEK3P51956 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NEK3P51956 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms