Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 AC098831.1-202ENST00000438821 336 ntBASIC13.96□□□□□ -0.17
NKX3-1Q99801 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.96□□□□□ -0.17
NKX3-1Q99801 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NKX3-1Q99801 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.96□□□□□ -0.18
NKX3-1Q99801 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
NKX3-1Q99801 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NKX3-1Q99801 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 HAUS4P1-201ENST00000406739 1145 ntBASIC13.95□□□□□ -0.18
NKX3-1Q99801 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 MDH2-205ENST00000461263 648 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
NKX3-1Q99801 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.95□□□□□ -0.18
NKX3-1Q99801 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
NKX3-1Q99801 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
NKX3-1Q99801 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms