Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.18■□□□□ 0.34
KRT39Q6A163 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
KRT39Q6A163 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.18■□□□□ 0.34
KRT39Q6A163 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
KRT39Q6A163 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.18■□□□□ 0.34
KRT39Q6A163 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 AC092850.2-201ENST00000623821 2697 ntBASIC17.17■□□□□ 0.34
KRT39Q6A163 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.17■□□□□ 0.34
KRT39Q6A163 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.17■□□□□ 0.34
KRT39Q6A163 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 SERBP1P3-201ENST00000459980 809 ntBASIC17.17■□□□□ 0.34
KRT39Q6A163 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.17■□□□□ 0.34
KRT39Q6A163 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.17■□□□□ 0.34
KRT39Q6A163 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.17■□□□□ 0.34
KRT39Q6A163 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.17■□□□□ 0.34
KRT39Q6A163 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.17■□□□□ 0.34
KRT39Q6A163 MIR6069-201ENST00000620069 79 ntBASIC17.17■□□□□ 0.34
KRT39Q6A163 AC073592.8-201ENST00000624126 511 ntBASIC17.17■□□□□ 0.34
KRT39Q6A163 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.17■□□□□ 0.34
KRT39Q6A163 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
KRT39Q6A163 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 AC092127.1-201ENST00000567093 3455 ntBASIC17.16■□□□□ 0.34
KRT39Q6A163 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
KRT39Q6A163 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 AL162727.3-201ENST00000635661 2787 ntBASIC17.16■□□□□ 0.34
KRT39Q6A163 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.16■□□□□ 0.34
KRT39Q6A163 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.16■□□□□ 0.34
KRT39Q6A163 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 TEX28P1-201ENST00000613479 1221 ntBASIC17.16■□□□□ 0.34
KRT39Q6A163 TEX28P2-201ENST00000617764 1221 ntBASIC17.16■□□□□ 0.34
KRT39Q6A163 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.16■□□□□ 0.34
KRT39Q6A163 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
KRT39Q6A163 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
KRT39Q6A163 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.15■□□□□ 0.34
KRT39Q6A163 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.15■□□□□ 0.34
KRT39Q6A163 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms