Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 SERBP1P3-201ENST00000459980 809 ntBASIC15.07■□□□□ 0
PTCHD1Q96NR3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 SPCS2P1-201ENST00000561636 679 ntBASIC15.07■□□□□ 0
PTCHD1Q96NR3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 AC134407.2-201ENST00000625089 1978 ntBASIC15.07■□□□□ 0
PTCHD1Q96NR3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PTCHD1Q96NR3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTCHD1Q96NR3 BNIP3P1-202ENST00000550043 1585 ntBASIC15.07■□□□□ 0
PTCHD1Q96NR3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AL096865.1-201ENST00000606796 927 ntBASIC15.06■□□□□ 0
PTCHD1Q96NR3 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC087499.5-201ENST00000452760 1342 ntBASIC15.06■□□□□ 0
PTCHD1Q96NR3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC024909.3-201ENST00000611513 2257 ntBASIC15.06■□□□□ 0
PTCHD1Q96NR3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.06■□□□□ 0
PTCHD1Q96NR3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 AC068587.6-202ENST00000641839 5619 ntBASIC15.06■□□□□ 0
PTCHD1Q96NR3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PTCHD1Q96NR3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms