Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA1Q9Y5H4 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 UNC93B3-201ENST00000308076 687 ntBASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.7■■□□□ 1.22
PCDHGA1Q9Y5H4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 SUDS3P1-201ENST00000505831 966 ntBASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 SNX5-217ENST00000606557 1087 ntBASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA1Q9Y5H4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 EDA-201ENST00000338901 1233 ntBASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 AC026271.2-201ENST00000428091 497 ntBASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 AL031432.3-201ENST00000607698 485 ntBASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 AL136162.1-201ENST00000607711 1078 ntBASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHGA1Q9Y5H4 AC135279.3-201ENST00000610945 1311 ntBASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA1Q9Y5H4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
PCDHGA1Q9Y5H4 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA1Q9Y5H4 FOXO3B-201ENST00000395675 1928 ntBASIC22.66■■□□□ 1.22
PCDHGA1Q9Y5H4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 SRD5A1P1-201ENST00000442297 786 ntBASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 MIR5787-201ENST00000611784 55 ntBASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 AL355001.2-201ENST00000620617 1191 ntBASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
PCDHGA1Q9Y5H4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PCDHGA1Q9Y5H4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.64■■□□□ 1.21
PCDHGA1Q9Y5H4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.64■■□□□ 1.21
PCDHGA1Q9Y5H4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.64■■□□□ 1.21
PCDHGA1Q9Y5H4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHGA1Q9Y5H4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 AC104564.3-201ENST00000582367 638 ntBASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA1Q9Y5H4 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
PCDHGA1Q9Y5H4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PCDHGA1Q9Y5H4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PCDHGA1Q9Y5H4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.61■■□□□ 1.21
PCDHGA1Q9Y5H4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.61■■□□□ 1.21
PCDHGA1Q9Y5H4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PCDHGA1Q9Y5H4 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 AC090877.2-201ENST00000558441 1738 ntBASIC22.6■■□□□ 1.21
PCDHGA1Q9Y5H4 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 AC024257.2-201ENST00000549699 147 ntBASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA1Q9Y5H4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHGA1Q9Y5H4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
PCDHGA1Q9Y5H4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHGA1Q9Y5H4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.58■■□□□ 1.21
PCDHGA1Q9Y5H4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.58■■□□□ 1.21
PCDHGA1Q9Y5H4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms