Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 FOXO3B-201ENST00000395675 1928 ntBASIC30.08■■■□□ 2.41
RTCBQ9Y3I0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTCBQ9Y3I0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 AC135279.3-201ENST00000610945 1311 ntBASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
RTCBQ9Y3I0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RTCBQ9Y3I0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
RTCBQ9Y3I0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.05■■■□□ 2.4
RTCBQ9Y3I0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.05■■■□□ 2.4
RTCBQ9Y3I0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.04■■■□□ 2.4
RTCBQ9Y3I0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RTCBQ9Y3I0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
RTCBQ9Y3I0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC30.03■■■□□ 2.4
RTCBQ9Y3I0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
RTCBQ9Y3I0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RTCBQ9Y3I0 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
RTCBQ9Y3I0 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.02■■■□□ 2.4
RTCBQ9Y3I0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.02■■■□□ 2.4
RTCBQ9Y3I0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RTCBQ9Y3I0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RTCBQ9Y3I0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.01■■■□□ 2.39
RTCBQ9Y3I0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 EDA-201ENST00000338901 1233 ntBASIC30■■■□□ 2.39
RTCBQ9Y3I0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RTCBQ9Y3I0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30■■■□□ 2.39
RTCBQ9Y3I0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC30■■■□□ 2.39
RTCBQ9Y3I0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 SRD5A1P1-201ENST00000442297 786 ntBASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 AC024257.2-201ENST00000549699 147 ntBASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 AL355001.2-201ENST00000620617 1191 ntBASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
RTCBQ9Y3I0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
RTCBQ9Y3I0 MIR5787-201ENST00000611784 55 ntBASIC29.98■■■□□ 2.39
RTCBQ9Y3I0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC29.98■■■□□ 2.39
RTCBQ9Y3I0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
RTCBQ9Y3I0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.97■■■□□ 2.39
RTCBQ9Y3I0 AC104564.3-201ENST00000582367 638 ntBASIC29.97■■■□□ 2.39
RTCBQ9Y3I0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RTCBQ9Y3I0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
RTCBQ9Y3I0 AC090877.2-201ENST00000558441 1738 ntBASIC29.96■■■□□ 2.39
RTCBQ9Y3I0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
RTCBQ9Y3I0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.96■■■□□ 2.39
RTCBQ9Y3I0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
RTCBQ9Y3I0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.95■■■□□ 2.39
RTCBQ9Y3I0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC29.95■■■□□ 2.38
RTCBQ9Y3I0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
RTCBQ9Y3I0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
RTCBQ9Y3I0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
RTCBQ9Y3I0 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
RTCBQ9Y3I0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
RTCBQ9Y3I0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
RTCBQ9Y3I0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.94■■■□□ 2.38
RTCBQ9Y3I0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
RTCBQ9Y3I0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
RTCBQ9Y3I0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
RTCBQ9Y3I0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
RTCBQ9Y3I0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
RTCBQ9Y3I0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
RTCBQ9Y3I0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
RTCBQ9Y3I0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
RTCBQ9Y3I0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.92■■■□□ 2.38
RTCBQ9Y3I0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.92■■■□□ 2.38
RTCBQ9Y3I0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
RTCBQ9Y3I0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 LBH-205ENST00000407930 756 ntTSL 2 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 AC105265.2-201ENST00000467189 838 ntBASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC29.9■■■□□ 2.38
RTCBQ9Y3I0 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 AL136967.2-201ENST00000623968 743 ntBASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
RTCBQ9Y3I0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms