Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CISHQ9NSE2 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CISHQ9NSE2 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CISHQ9NSE2 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CISHQ9NSE2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CISHQ9NSE2 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.15■■□□□ 1.62
CISHQ9NSE2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
CISHQ9NSE2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CISHQ9NSE2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CISHQ9NSE2 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
CISHQ9NSE2 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CISHQ9NSE2 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CISHQ9NSE2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CISHQ9NSE2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CISHQ9NSE2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CISHQ9NSE2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.13■■□□□ 1.61
CISHQ9NSE2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.13■■□□□ 1.61
CISHQ9NSE2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CISHQ9NSE2 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.12■■□□□ 1.61
CISHQ9NSE2 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CISHQ9NSE2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CISHQ9NSE2 AC022616.5-201ENST00000518796 181 ntBASIC25.12■■□□□ 1.61
CISHQ9NSE2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.12■■□□□ 1.61
CISHQ9NSE2 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.12■■□□□ 1.61
CISHQ9NSE2 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CISHQ9NSE2 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.12■■□□□ 1.61
CISHQ9NSE2 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.11■■□□□ 1.61
CISHQ9NSE2 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CISHQ9NSE2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
CISHQ9NSE2 MIR6089-201ENST00000616698 64 ntBASIC25.11■■□□□ 1.61
CISHQ9NSE2 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.11■■□□□ 1.61
CISHQ9NSE2 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.11■■□□□ 1.61
CISHQ9NSE2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CISHQ9NSE2 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.1■■□□□ 1.61
CISHQ9NSE2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.1■■□□□ 1.61
CISHQ9NSE2 AC103834.1-201ENST00000520383 144 ntBASIC25.1■■□□□ 1.61
CISHQ9NSE2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.1■■□□□ 1.61
CISHQ9NSE2 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
CISHQ9NSE2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.1■■□□□ 1.61
CISHQ9NSE2 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CISHQ9NSE2 MIR4508-201ENST00000584178 70 ntBASIC25.09■■□□□ 1.61
CISHQ9NSE2 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CISHQ9NSE2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.09■■□□□ 1.61
CISHQ9NSE2 KRT8P33-201ENST00000508125 1423 ntBASIC25.09■■□□□ 1.61
CISHQ9NSE2 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CISHQ9NSE2 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
CISHQ9NSE2 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
CISHQ9NSE2 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CISHQ9NSE2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.08■■□□□ 1.61
CISHQ9NSE2 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
CISHQ9NSE2 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC25.08■■□□□ 1.6
CISHQ9NSE2 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CISHQ9NSE2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.07■■□□□ 1.6
CISHQ9NSE2 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.07■■□□□ 1.6
CISHQ9NSE2 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CISHQ9NSE2 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
CISHQ9NSE2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.07■■□□□ 1.6
CISHQ9NSE2 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CISHQ9NSE2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.06■■□□□ 1.6
CISHQ9NSE2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.06■■□□□ 1.6
CISHQ9NSE2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.06■■□□□ 1.6
CISHQ9NSE2 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CISHQ9NSE2 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
CISHQ9NSE2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.05■■□□□ 1.6
CISHQ9NSE2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CISHQ9NSE2 AP003733.4-201ENST00000623785 1697 ntBASIC25.05■■□□□ 1.6
CISHQ9NSE2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.05■■□□□ 1.6
CISHQ9NSE2 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CISHQ9NSE2 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CISHQ9NSE2 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.04■■□□□ 1.6
CISHQ9NSE2 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.04■■□□□ 1.6
CISHQ9NSE2 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CISHQ9NSE2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.04■■□□□ 1.6
CISHQ9NSE2 AC090877.2-201ENST00000558441 1738 ntBASIC25.04■■□□□ 1.6
CISHQ9NSE2 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CISHQ9NSE2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CISHQ9NSE2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
CISHQ9NSE2 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.04■■□□□ 1.6
CISHQ9NSE2 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CISHQ9NSE2 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CISHQ9NSE2 YBX1P4-201ENST00000392794 808 ntBASIC25.03■■□□□ 1.6
CISHQ9NSE2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CISHQ9NSE2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CISHQ9NSE2 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CISHQ9NSE2 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CISHQ9NSE2 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CISHQ9NSE2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CISHQ9NSE2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.02■■□□□ 1.6
CISHQ9NSE2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.02■■□□□ 1.6
CISHQ9NSE2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CISHQ9NSE2 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CISHQ9NSE2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.01■■□□□ 1.59
CISHQ9NSE2 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
CISHQ9NSE2 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.01■■□□□ 1.59
CISHQ9NSE2 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CISHQ9NSE2 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25■■□□□ 1.59
CISHQ9NSE2 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CISHQ9NSE2 AC120024.1-201ENST00000562672 995 ntBASIC25■■□□□ 1.59
CISHQ9NSE2 AC011551.1-201ENST00000614101 683 ntBASIC25■■□□□ 1.59
CISHQ9NSE2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms