Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 AC110285.6-201ENST00000617652 491 ntBASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
USHBP1Q8N6Y0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
USHBP1Q8N6Y0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
USHBP1Q8N6Y0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
USHBP1Q8N6Y0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC31.34■■■□□ 2.61
USHBP1Q8N6Y0 RASSF1-AS1-201ENST00000629828 790 ntBASIC31.34■■■□□ 2.61
USHBP1Q8N6Y0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USHBP1Q8N6Y0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
USHBP1Q8N6Y0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 CD72-202ENST00000378430 585 ntTSL 3 BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 AL512631.2-201ENST00000604634 923 ntBASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.32■■■□□ 2.6
USHBP1Q8N6Y0 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 AL356740.2-201ENST00000601559 647 ntBASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
USHBP1Q8N6Y0 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
USHBP1Q8N6Y0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
USHBP1Q8N6Y0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
USHBP1Q8N6Y0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.29■■■□□ 2.6
USHBP1Q8N6Y0 AK3-203ENST00000447596 705 ntTSL 2 BASIC31.29■■■□□ 2.6
USHBP1Q8N6Y0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
USHBP1Q8N6Y0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.29■■■□□ 2.6
USHBP1Q8N6Y0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.29■■■□□ 2.6
USHBP1Q8N6Y0 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 AC096631.2-201ENST00000436136 790 ntBASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.28■■■□□ 2.6
USHBP1Q8N6Y0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.27■■■□□ 2.6
USHBP1Q8N6Y0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USHBP1Q8N6Y0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.26■■■□□ 2.6
USHBP1Q8N6Y0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC31.26■■■□□ 2.59
USHBP1Q8N6Y0 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
USHBP1Q8N6Y0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
USHBP1Q8N6Y0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
USHBP1Q8N6Y0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
USHBP1Q8N6Y0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.25■■■□□ 2.59
USHBP1Q8N6Y0 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USHBP1Q8N6Y0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.23■■■□□ 2.59
USHBP1Q8N6Y0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USHBP1Q8N6Y0 AC090877.2-201ENST00000558441 1738 ntBASIC31.22■■■□□ 2.59
USHBP1Q8N6Y0 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.22■■■□□ 2.59
USHBP1Q8N6Y0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
USHBP1Q8N6Y0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.21■■■□□ 2.59
USHBP1Q8N6Y0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC31.21■■■□□ 2.59
USHBP1Q8N6Y0 SNX5-217ENST00000606557 1087 ntBASIC31.21■■■□□ 2.59
USHBP1Q8N6Y0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.2■■■□□ 2.59
USHBP1Q8N6Y0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
USHBP1Q8N6Y0 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
USHBP1Q8N6Y0 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
USHBP1Q8N6Y0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
USHBP1Q8N6Y0 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USHBP1Q8N6Y0 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC31.19■■■□□ 2.58
USHBP1Q8N6Y0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USHBP1Q8N6Y0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USHBP1Q8N6Y0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC31.18■■■□□ 2.58
USHBP1Q8N6Y0 AC097639.1-201ENST00000565519 1891 ntBASIC31.17■■■□□ 2.58
USHBP1Q8N6Y0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.17■■■□□ 2.58
USHBP1Q8N6Y0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
USHBP1Q8N6Y0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
USHBP1Q8N6Y0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms