Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
DDX53Q86TM3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
DDX53Q86TM3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
DDX53Q86TM3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
DDX53Q86TM3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.14■■□□□ 1.62
DDX53Q86TM3 MIR4466-201ENST00000606121 54 ntBASIC25.14■■□□□ 1.62
DDX53Q86TM3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
DDX53Q86TM3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
DDX53Q86TM3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
DDX53Q86TM3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.13■■□□□ 1.61
DDX53Q86TM3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DDX53Q86TM3 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.12■■□□□ 1.61
DDX53Q86TM3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.11■■□□□ 1.61
DDX53Q86TM3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.11■■□□□ 1.61
DDX53Q86TM3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX53Q86TM3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
DDX53Q86TM3 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.11■■□□□ 1.61
DDX53Q86TM3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
DDX53Q86TM3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.11■■□□□ 1.61
DDX53Q86TM3 AC110285.6-201ENST00000617652 491 ntBASIC25.11■■□□□ 1.61
DDX53Q86TM3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
DDX53Q86TM3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX53Q86TM3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX53Q86TM3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX53Q86TM3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX53Q86TM3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.1■■□□□ 1.61
DDX53Q86TM3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.1■■□□□ 1.61
DDX53Q86TM3 AL512631.2-201ENST00000604634 923 ntBASIC25.1■■□□□ 1.61
DDX53Q86TM3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.1■■□□□ 1.61
DDX53Q86TM3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX53Q86TM3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX53Q86TM3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
DDX53Q86TM3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
DDX53Q86TM3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX53Q86TM3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.09■■□□□ 1.61
DDX53Q86TM3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.09■■□□□ 1.61
DDX53Q86TM3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.09■■□□□ 1.61
DDX53Q86TM3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX53Q86TM3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
DDX53Q86TM3 AC090877.2-201ENST00000558441 1738 ntBASIC25.09■■□□□ 1.61
DDX53Q86TM3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.08■■□□□ 1.61
DDX53Q86TM3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.08■■□□□ 1.61
DDX53Q86TM3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX53Q86TM3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.08■■□□□ 1.61
DDX53Q86TM3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
DDX53Q86TM3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
DDX53Q86TM3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
DDX53Q86TM3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.08■■□□□ 1.6
DDX53Q86TM3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
DDX53Q86TM3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.07■■□□□ 1.6
DDX53Q86TM3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
DDX53Q86TM3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.07■■□□□ 1.6
DDX53Q86TM3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
DDX53Q86TM3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
DDX53Q86TM3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
DDX53Q86TM3 AC096631.2-201ENST00000436136 790 ntBASIC25.06■■□□□ 1.6
DDX53Q86TM3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
DDX53Q86TM3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX53Q86TM3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX53Q86TM3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
DDX53Q86TM3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
DDX53Q86TM3 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX53Q86TM3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX53Q86TM3 SNX5-217ENST00000606557 1087 ntBASIC25.05■■□□□ 1.6
DDX53Q86TM3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX53Q86TM3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
DDX53Q86TM3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX53Q86TM3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
DDX53Q86TM3 MIR6722-201ENST00000617286 78 ntBASIC25.04■■□□□ 1.6
DDX53Q86TM3 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.04■■□□□ 1.6
DDX53Q86TM3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX53Q86TM3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
DDX53Q86TM3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX53Q86TM3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX53Q86TM3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.03■■□□□ 1.6
DDX53Q86TM3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.03■■□□□ 1.6
DDX53Q86TM3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.03■■□□□ 1.6
DDX53Q86TM3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.03■■□□□ 1.6
DDX53Q86TM3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
DDX53Q86TM3 AC097639.1-201ENST00000565519 1891 ntBASIC25.02■■□□□ 1.6
DDX53Q86TM3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX53Q86TM3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX53Q86TM3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DDX53Q86TM3 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX53Q86TM3 AC005837.3-201ENST00000612163 286 ntBASIC25.02■■□□□ 1.6
DDX53Q86TM3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX53Q86TM3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC25.01■■□□□ 1.59
DDX53Q86TM3 AC133561.4-201ENST00000566112 224 ntBASIC25.01■■□□□ 1.59
DDX53Q86TM3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.01■■□□□ 1.59
DDX53Q86TM3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DDX53Q86TM3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.01■■□□□ 1.59
DDX53Q86TM3 AC096887.2-201ENST00000623443 1957 ntBASIC25■■□□□ 1.59
DDX53Q86TM3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25■■□□□ 1.59
DDX53Q86TM3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX53Q86TM3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX53Q86TM3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX53Q86TM3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25■■□□□ 1.59
DDX53Q86TM3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25■■□□□ 1.59
DDX53Q86TM3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
DDX53Q86TM3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms