Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.49■■□□□ 1.03
RPUSD3Q6P087 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPUSD3Q6P087 AL356740.2-201ENST00000601559 647 ntBASIC21.49■■□□□ 1.03
RPUSD3Q6P087 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
RPUSD3Q6P087 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.48■■□□□ 1.03
RPUSD3Q6P087 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RPUSD3Q6P087 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 AL136116.3-201ENST00000402907 1138 ntBASIC21.46■■□□□ 1.03
RPUSD3Q6P087 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.46■■□□□ 1.03
RPUSD3Q6P087 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RPUSD3Q6P087 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
RPUSD3Q6P087 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RPUSD3Q6P087 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.45■■□□□ 1.02
RPUSD3Q6P087 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
RPUSD3Q6P087 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.44■■□□□ 1.02
RPUSD3Q6P087 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RPUSD3Q6P087 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RPUSD3Q6P087 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.44■■□□□ 1.02
RPUSD3Q6P087 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RPUSD3Q6P087 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RPUSD3Q6P087 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 MIR935-201ENST00000401179 91 ntBASIC21.42■■□□□ 1.02
RPUSD3Q6P087 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 AF131216.4-201ENST00000638924 1588 ntBASIC21.42■■□□□ 1.02
RPUSD3Q6P087 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.42■■□□□ 1.02
RPUSD3Q6P087 FOXO3B-201ENST00000395675 1928 ntBASIC21.41■■□□□ 1.02
RPUSD3Q6P087 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RPUSD3Q6P087 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RPUSD3Q6P087 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
RPUSD3Q6P087 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
RPUSD3Q6P087 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.39■■□□□ 1.02
RPUSD3Q6P087 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RPUSD3Q6P087 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RPUSD3Q6P087 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RPUSD3Q6P087 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RPUSD3Q6P087 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms