Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MIR6724-1-201ENST00000616420 92 ntBASIC29.21■■■□□ 2.27
COL4A1P02462 MIR6724-2-201ENST00000616483 92 ntBASIC29.21■■■□□ 2.27
COL4A1P02462 MIR6724-4-201ENST00000617390 92 ntBASIC29.21■■■□□ 2.27
COL4A1P02462 MIR6724-3-201ENST00000622482 92 ntBASIC29.21■■■□□ 2.27
COL4A1P02462 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC29.21■■■□□ 2.27
COL4A1P02462 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
COL4A1P02462 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL4A1P02462 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
COL4A1P02462 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL4A1P02462 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.2■■■□□ 2.26
COL4A1P02462 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC29.2■■■□□ 2.26
COL4A1P02462 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL4A1P02462 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.26
COL4A1P02462 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL4A1P02462 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC29.19■■■□□ 2.26
COL4A1P02462 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC29.19■■■□□ 2.26
COL4A1P02462 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL4A1P02462 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC29.19■■■□□ 2.26
COL4A1P02462 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL4A1P02462 AL136116.3-201ENST00000402907 1138 ntBASIC29.18■■■□□ 2.26
COL4A1P02462 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC29.18■■■□□ 2.26
COL4A1P02462 SNX5-217ENST00000606557 1087 ntBASIC29.18■■■□□ 2.26
COL4A1P02462 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL4A1P02462 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC29.18■■■□□ 2.26
COL4A1P02462 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC29.18■■■□□ 2.26
COL4A1P02462 CLTA-210ENST00000540080 989 ntTSL 2 BASIC29.18■■■□□ 2.26
COL4A1P02462 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL4A1P02462 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
COL4A1P02462 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC29.17■■■□□ 2.26
COL4A1P02462 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC29.17■■■□□ 2.26
COL4A1P02462 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL4A1P02462 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.16■■■□□ 2.26
COL4A1P02462 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.16■■■□□ 2.26
COL4A1P02462 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.16■■■□□ 2.26
COL4A1P02462 CLTA-206ENST00000466396 695 ntTSL 2 BASIC29.16■■■□□ 2.26
COL4A1P02462 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.16■■■□□ 2.26
COL4A1P02462 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL4A1P02462 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC29.16■■■□□ 2.26
COL4A1P02462 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
COL4A1P02462 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.15■■■□□ 2.26
COL4A1P02462 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL4A1P02462 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL4A1P02462 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
COL4A1P02462 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL4A1P02462 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC29.15■■■□□ 2.26
COL4A1P02462 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
COL4A1P02462 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL4A1P02462 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
COL4A1P02462 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL4A1P02462 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC29.15■■■□□ 2.26
COL4A1P02462 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC29.15■■■□□ 2.26
COL4A1P02462 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
COL4A1P02462 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC29.14■■■□□ 2.26
COL4A1P02462 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
COL4A1P02462 RALB-208ENST00000631312 311 ntTSL 5 BASIC29.14■■■□□ 2.26
COL4A1P02462 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC29.14■■■□□ 2.25
COL4A1P02462 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A1P02462 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.13■■■□□ 2.25
COL4A1P02462 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A1P02462 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A1P02462 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.13■■■□□ 2.25
COL4A1P02462 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
COL4A1P02462 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
COL4A1P02462 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A1P02462 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC29.12■■■□□ 2.25
COL4A1P02462 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A1P02462 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC29.12■■■□□ 2.25
COL4A1P02462 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.12■■■□□ 2.25
COL4A1P02462 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A1P02462 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A1P02462 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC29.12■■■□□ 2.25
COL4A1P02462 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC29.12■■■□□ 2.25
COL4A1P02462 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A1P02462 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL4A1P02462 AC010501.1-201ENST00000606270 1962 ntBASIC29.11■■■□□ 2.25
COL4A1P02462 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL4A1P02462 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
COL4A1P02462 MIR935-201ENST00000401179 91 ntBASIC29.1■■■□□ 2.25
COL4A1P02462 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC29.1■■■□□ 2.25
COL4A1P02462 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC29.1■■■□□ 2.25
COL4A1P02462 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.1■■■□□ 2.25
COL4A1P02462 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
COL4A1P02462 NALT1-201ENST00000429224 738 ntTSL 5 BASIC29.09■■■□□ 2.25
COL4A1P02462 SSSCA1-AS1-201ENST00000567594 614 ntBASIC29.09■■■□□ 2.25
COL4A1P02462 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL4A1P02462 AL139246.5-201ENST00000606645 996 ntBASIC29.09■■■□□ 2.25
COL4A1P02462 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL4A1P02462 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC29.08■■■□□ 2.25
COL4A1P02462 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL4A1P02462 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL4A1P02462 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.08■■■□□ 2.25
COL4A1P02462 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.08■■■□□ 2.25
COL4A1P02462 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL4A1P02462 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL4A1P02462 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC29.07■■■□□ 2.24
COL4A1P02462 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL4A1P02462 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
COL4A1P02462 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC29.06■■■□□ 2.24
COL4A1P02462 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
COL4A1P02462 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms