Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
NR2E3Q9Y5X4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC33.26■■■□□ 2.91
NR2E3Q9Y5X4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
NR2E3Q9Y5X4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
NR2E3Q9Y5X4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC33.19■■■□□ 2.9
NR2E3Q9Y5X4 RPS2P35-201ENST00000443417 897 ntBASIC33.17■■■□□ 2.9
NR2E3Q9Y5X4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
NR2E3Q9Y5X4 AC097358.2-201ENST00000607541 1159 ntBASIC33.09■■■□□ 2.89
NR2E3Q9Y5X4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
NR2E3Q9Y5X4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
NR2E3Q9Y5X4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.89■■■□□ 2.86
NR2E3Q9Y5X4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.85■■■□□ 2.85
NR2E3Q9Y5X4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.85■■■□□ 2.85
NR2E3Q9Y5X4 SUZ12P1-203ENST00000578195 985 ntBASIC32.84■■■□□ 2.85
NR2E3Q9Y5X4 AC136428.2-201ENST00000563187 214 ntBASIC32.82■■■□□ 2.84
NR2E3Q9Y5X4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
NR2E3Q9Y5X4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
NR2E3Q9Y5X4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
NR2E3Q9Y5X4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.81■■■□□ 2.84
NR2E3Q9Y5X4 SETD8P1-201ENST00000623146 1180 ntBASIC32.8■■■□□ 2.84
NR2E3Q9Y5X4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
NR2E3Q9Y5X4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
NR2E3Q9Y5X4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
NR2E3Q9Y5X4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.83
NR2E3Q9Y5X4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
NR2E3Q9Y5X4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
NR2E3Q9Y5X4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
NR2E3Q9Y5X4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.67■■■□□ 2.82
NR2E3Q9Y5X4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.63■■■□□ 2.81
NR2E3Q9Y5X4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
NR2E3Q9Y5X4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
NR2E3Q9Y5X4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.59■■■□□ 2.81
NR2E3Q9Y5X4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.59■■■□□ 2.81
NR2E3Q9Y5X4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.58■■■□□ 2.81
NR2E3Q9Y5X4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
NR2E3Q9Y5X4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.55■■■□□ 2.8
NR2E3Q9Y5X4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.55■■■□□ 2.8
NR2E3Q9Y5X4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.53■■■□□ 2.8
NR2E3Q9Y5X4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
NR2E3Q9Y5X4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.47■■■□□ 2.79
NR2E3Q9Y5X4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
NR2E3Q9Y5X4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
NR2E3Q9Y5X4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.43■■■□□ 2.78
NR2E3Q9Y5X4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.43■■■□□ 2.78
NR2E3Q9Y5X4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.42■■■□□ 2.78
NR2E3Q9Y5X4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
NR2E3Q9Y5X4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32.41■■■□□ 2.78
NR2E3Q9Y5X4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
NR2E3Q9Y5X4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
NR2E3Q9Y5X4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
NR2E3Q9Y5X4 AL162393.1-201ENST00000437852 946 ntBASIC32.34■■■□□ 2.77
NR2E3Q9Y5X4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.33■■■□□ 2.77
NR2E3Q9Y5X4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
NR2E3Q9Y5X4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
NR2E3Q9Y5X4 AP006261.1-201ENST00000584783 668 ntBASIC32.32■■■□□ 2.76
NR2E3Q9Y5X4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.31■■■□□ 2.76
NR2E3Q9Y5X4 MIR7108-201ENST00000614319 87 ntBASIC32.29■■■□□ 2.76
NR2E3Q9Y5X4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.27■■■□□ 2.76
NR2E3Q9Y5X4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.19■■■□□ 2.74
NR2E3Q9Y5X4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
NR2E3Q9Y5X4 ABHD17AP4-201ENST00000411545 909 ntBASIC32.17■■■□□ 2.74
NR2E3Q9Y5X4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.16■■■□□ 2.74
NR2E3Q9Y5X4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
NR2E3Q9Y5X4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.1■■■□□ 2.73
NR2E3Q9Y5X4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.1■■■□□ 2.73
NR2E3Q9Y5X4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.1■■■□□ 2.73
NR2E3Q9Y5X4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
NR2E3Q9Y5X4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.09■■■□□ 2.73
NR2E3Q9Y5X4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
NR2E3Q9Y5X4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
NR2E3Q9Y5X4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
NR2E3Q9Y5X4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.06■■■□□ 2.72
NR2E3Q9Y5X4 CAHM-201ENST00000604200 896 ntBASIC32.06■■■□□ 2.72
NR2E3Q9Y5X4 HLA-V-202ENST00000446817 847 ntBASIC32.05■■■□□ 2.72
NR2E3Q9Y5X4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.03■■■□□ 2.72
NR2E3Q9Y5X4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.03■■■□□ 2.72
NR2E3Q9Y5X4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NR2E3Q9Y5X4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NR2E3Q9Y5X4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
NR2E3Q9Y5X4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
NR2E3Q9Y5X4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.01■■■□□ 2.71
NR2E3Q9Y5X4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
NR2E3Q9Y5X4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32■■■□□ 2.71
NR2E3Q9Y5X4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.99■■■□□ 2.71
NR2E3Q9Y5X4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.98■■■□□ 2.71
NR2E3Q9Y5X4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NR2E3Q9Y5X4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NR2E3Q9Y5X4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
NR2E3Q9Y5X4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.91■■■□□ 2.7
NR2E3Q9Y5X4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
NR2E3Q9Y5X4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NR2E3Q9Y5X4 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.9■■■□□ 2.7
NR2E3Q9Y5X4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
NR2E3Q9Y5X4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
NR2E3Q9Y5X4 AL391121.1-201ENST00000607967 1349 ntBASIC31.87■■■□□ 2.69
NR2E3Q9Y5X4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
NR2E3Q9Y5X4 MIR3665-201ENST00000578708 105 ntBASIC31.85■■■□□ 2.69
NR2E3Q9Y5X4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
NR2E3Q9Y5X4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.81■■■□□ 2.68
NR2E3Q9Y5X4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms