Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
UBQLN3Q9H347 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.57■■□□□ 1.84
UBQLN3Q9H347 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
UBQLN3Q9H347 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
UBQLN3Q9H347 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
UBQLN3Q9H347 AP002365.1-201ENST00000603448 772 ntBASIC26.55■■□□□ 1.84
UBQLN3Q9H347 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC26.53■■□□□ 1.84
UBQLN3Q9H347 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
UBQLN3Q9H347 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
UBQLN3Q9H347 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
UBQLN3Q9H347 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
UBQLN3Q9H347 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
UBQLN3Q9H347 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.45■■□□□ 1.82
UBQLN3Q9H347 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.45■■□□□ 1.82
UBQLN3Q9H347 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.37■■□□□ 1.81
UBQLN3Q9H347 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
UBQLN3Q9H347 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
UBQLN3Q9H347 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
UBQLN3Q9H347 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
UBQLN3Q9H347 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
UBQLN3Q9H347 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.33■■□□□ 1.81
UBQLN3Q9H347 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
UBQLN3Q9H347 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
UBQLN3Q9H347 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBQLN3Q9H347 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBQLN3Q9H347 DYNLL1-208ENST00000550178 581 ntBASIC26.3■■□□□ 1.8
UBQLN3Q9H347 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBQLN3Q9H347 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UBQLN3Q9H347 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBQLN3Q9H347 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.27■■□□□ 1.8
UBQLN3Q9H347 AC145285.7-201ENST00000614819 1539 ntBASIC26.26■■□□□ 1.79
UBQLN3Q9H347 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.26■■□□□ 1.79
UBQLN3Q9H347 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.26■■□□□ 1.79
UBQLN3Q9H347 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
UBQLN3Q9H347 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.24■■□□□ 1.79
UBQLN3Q9H347 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
UBQLN3Q9H347 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
UBQLN3Q9H347 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.21■■□□□ 1.79
UBQLN3Q9H347 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
UBQLN3Q9H347 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
UBQLN3Q9H347 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
UBQLN3Q9H347 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
UBQLN3Q9H347 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
UBQLN3Q9H347 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
UBQLN3Q9H347 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
UBQLN3Q9H347 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.14■■□□□ 1.77
UBQLN3Q9H347 AL031258.1-201ENST00000623562 325 ntBASIC26.13■■□□□ 1.77
UBQLN3Q9H347 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
UBQLN3Q9H347 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.12■■□□□ 1.77
UBQLN3Q9H347 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
UBQLN3Q9H347 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
UBQLN3Q9H347 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
UBQLN3Q9H347 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.1■■□□□ 1.77
UBQLN3Q9H347 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
UBQLN3Q9H347 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
UBQLN3Q9H347 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
UBQLN3Q9H347 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
UBQLN3Q9H347 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
UBQLN3Q9H347 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
UBQLN3Q9H347 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
UBQLN3Q9H347 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
UBQLN3Q9H347 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.03■■□□□ 1.76
UBQLN3Q9H347 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
UBQLN3Q9H347 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
UBQLN3Q9H347 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
UBQLN3Q9H347 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
UBQLN3Q9H347 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.94■■□□□ 1.74
UBQLN3Q9H347 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
UBQLN3Q9H347 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.91■■□□□ 1.74
UBQLN3Q9H347 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
UBQLN3Q9H347 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.89■■□□□ 1.74
UBQLN3Q9H347 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.89■■□□□ 1.74
UBQLN3Q9H347 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
UBQLN3Q9H347 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
UBQLN3Q9H347 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.88■■□□□ 1.73
UBQLN3Q9H347 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.87■■□□□ 1.73
UBQLN3Q9H347 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.87■■□□□ 1.73
UBQLN3Q9H347 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
UBQLN3Q9H347 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
UBQLN3Q9H347 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.86■■□□□ 1.73
UBQLN3Q9H347 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
UBQLN3Q9H347 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.85■■□□□ 1.73
UBQLN3Q9H347 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.85■■□□□ 1.73
UBQLN3Q9H347 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC25.83■■□□□ 1.73
UBQLN3Q9H347 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
UBQLN3Q9H347 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
UBQLN3Q9H347 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
UBQLN3Q9H347 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
UBQLN3Q9H347 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
UBQLN3Q9H347 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC25.77■■□□□ 1.72
UBQLN3Q9H347 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
UBQLN3Q9H347 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
UBQLN3Q9H347 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC25.74■■□□□ 1.71
UBQLN3Q9H347 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.72■■□□□ 1.71
UBQLN3Q9H347 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.72■■□□□ 1.71
UBQLN3Q9H347 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.72■■□□□ 1.71
UBQLN3Q9H347 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
UBQLN3Q9H347 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
UBQLN3Q9H347 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
UBQLN3Q9H347 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 1133.7 ms