Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL25A1Q9BXS0 AC136428.2-201ENST00000563187 214 ntBASIC31.53■■■□□ 2.64
COL25A1Q9BXS0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL25A1Q9BXS0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
COL25A1Q9BXS0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
COL25A1Q9BXS0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.44■■■□□ 2.62
COL25A1Q9BXS0 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL25A1Q9BXS0 MIR7108-201ENST00000614319 87 ntBASIC31.41■■■□□ 2.62
COL25A1Q9BXS0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.33■■■□□ 2.61
COL25A1Q9BXS0 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL25A1Q9BXS0 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.3■■■□□ 2.6
COL25A1Q9BXS0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL25A1Q9BXS0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.29■■■□□ 2.6
COL25A1Q9BXS0 SETD8P1-201ENST00000623146 1180 ntBASIC31.28■■■□□ 2.6
COL25A1Q9BXS0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.26■■■□□ 2.59
COL25A1Q9BXS0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL25A1Q9BXS0 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL25A1Q9BXS0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL25A1Q9BXS0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.24■■■□□ 2.59
COL25A1Q9BXS0 HLA-V-202ENST00000446817 847 ntBASIC31.21■■■□□ 2.59
COL25A1Q9BXS0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL25A1Q9BXS0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.2■■■□□ 2.59
COL25A1Q9BXS0 AL162393.1-201ENST00000437852 946 ntBASIC31.18■■■□□ 2.58
COL25A1Q9BXS0 ABHD17AP4-201ENST00000411545 909 ntBASIC31.17■■■□□ 2.58
COL25A1Q9BXS0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.17■■■□□ 2.58
COL25A1Q9BXS0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.15■■■□□ 2.58
COL25A1Q9BXS0 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
COL25A1Q9BXS0 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL25A1Q9BXS0 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL25A1Q9BXS0 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL25A1Q9BXS0 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL25A1Q9BXS0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL25A1Q9BXS0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.04■■■□□ 2.56
COL25A1Q9BXS0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.04■■■□□ 2.56
COL25A1Q9BXS0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.02■■■□□ 2.56
COL25A1Q9BXS0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL25A1Q9BXS0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
COL25A1Q9BXS0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
COL25A1Q9BXS0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.93■■■□□ 2.54
COL25A1Q9BXS0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL25A1Q9BXS0 AP006261.1-201ENST00000584783 668 ntBASIC30.91■■■□□ 2.54
COL25A1Q9BXS0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL25A1Q9BXS0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL25A1Q9BXS0 HES6-203ENST00000409160 1600 ntTSL 2 BASIC30.84■■■□□ 2.53
COL25A1Q9BXS0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.81■■■□□ 2.52
COL25A1Q9BXS0 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL25A1Q9BXS0 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.78■■■□□ 2.52
COL25A1Q9BXS0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.77■■■□□ 2.52
COL25A1Q9BXS0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL25A1Q9BXS0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.75■■■□□ 2.51
COL25A1Q9BXS0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.74■■■□□ 2.51
COL25A1Q9BXS0 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC30.74■■■□□ 2.51
COL25A1Q9BXS0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.73■■■□□ 2.51
COL25A1Q9BXS0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.71■■■□□ 2.51
COL25A1Q9BXS0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
COL25A1Q9BXS0 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.7■■■□□ 2.51
COL25A1Q9BXS0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
COL25A1Q9BXS0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.69■■■□□ 2.5
COL25A1Q9BXS0 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.68■■■□□ 2.5
COL25A1Q9BXS0 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL25A1Q9BXS0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
COL25A1Q9BXS0 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
COL25A1Q9BXS0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.67■■■□□ 2.5
COL25A1Q9BXS0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.66■■■□□ 2.5
COL25A1Q9BXS0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.65■■■□□ 2.5
COL25A1Q9BXS0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.64■■■□□ 2.5
COL25A1Q9BXS0 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
COL25A1Q9BXS0 CAHM-201ENST00000604200 896 ntBASIC30.59■■■□□ 2.49
COL25A1Q9BXS0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.56■■■□□ 2.48
COL25A1Q9BXS0 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
COL25A1Q9BXS0 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.53■■■□□ 2.48
COL25A1Q9BXS0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.5■■■□□ 2.47
COL25A1Q9BXS0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.48■■■□□ 2.47
COL25A1Q9BXS0 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
COL25A1Q9BXS0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.43■■■□□ 2.46
COL25A1Q9BXS0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL25A1Q9BXS0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
COL25A1Q9BXS0 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
COL25A1Q9BXS0 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.4■■■□□ 2.46
COL25A1Q9BXS0 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL25A1Q9BXS0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.37■■■□□ 2.45
COL25A1Q9BXS0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.35■■■□□ 2.45
COL25A1Q9BXS0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.35■■■□□ 2.45
COL25A1Q9BXS0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL25A1Q9BXS0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL25A1Q9BXS0 MIR3665-201ENST00000578708 105 ntBASIC30.34■■■□□ 2.45
COL25A1Q9BXS0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL25A1Q9BXS0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
COL25A1Q9BXS0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
COL25A1Q9BXS0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.32■■■□□ 2.44
COL25A1Q9BXS0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.32■■■□□ 2.44
COL25A1Q9BXS0 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL25A1Q9BXS0 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL25A1Q9BXS0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.31■■■□□ 2.44
COL25A1Q9BXS0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL25A1Q9BXS0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL25A1Q9BXS0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
COL25A1Q9BXS0 AC087741.3-201ENST00000624270 1347 ntBASIC30.29■■■□□ 2.44
COL25A1Q9BXS0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.28■■■□□ 2.44
COL25A1Q9BXS0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms