Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC40.44■■■■■ 4.06
ABCA3Q99758 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC40.43■■■■■ 4.06
ABCA3Q99758 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC40.41■■■■■ 4.06
ABCA3Q99758 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC40.37■■■■■ 4.05
ABCA3Q99758 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC40.29■■■■■ 4.04
ABCA3Q99758 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC40.29■■■■■ 4.04
ABCA3Q99758 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC40.28■■■■■ 4.04
ABCA3Q99758 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC40.25■■■■■ 4.03
ABCA3Q99758 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
ABCA3Q99758 RARRES2P7-201ENST00000567349 469 ntBASIC40.2■■■■■ 4.03
ABCA3Q99758 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC40.15■■■■■ 4.02
ABCA3Q99758 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC40.12■■■■■ 4.01
ABCA3Q99758 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC40.1■■■■■ 4.01
ABCA3Q99758 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC40.09■■■■■ 4.01
ABCA3Q99758 AC136428.2-201ENST00000563187 214 ntBASIC40.09■■■■■ 4.01
ABCA3Q99758 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC40.08■■■■■ 4.01
ABCA3Q99758 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC40.03■■■■■ 4
ABCA3Q99758 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC40.02■■■■■ 4
ABCA3Q99758 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC39.92■■■■□ 3.98
ABCA3Q99758 SUZ12P1-203ENST00000578195 985 ntBASIC39.91■■■■□ 3.98
ABCA3Q99758 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC39.88■■■■□ 3.97
ABCA3Q99758 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC39.88■■■■□ 3.97
ABCA3Q99758 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC39.85■■■■□ 3.97
ABCA3Q99758 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC39.84■■■■□ 3.97
ABCA3Q99758 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC39.83■■■■□ 3.97
ABCA3Q99758 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
ABCA3Q99758 AC097358.2-201ENST00000607541 1159 ntBASIC39.78■■■■□ 3.96
ABCA3Q99758 SETD8P1-201ENST00000623146 1180 ntBASIC39.77■■■■□ 3.96
ABCA3Q99758 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC39.75■■■■□ 3.95
ABCA3Q99758 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
ABCA3Q99758 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
ABCA3Q99758 EBPL-203ENST00000378270 579 ntTSL 2 BASIC39.68■■■■□ 3.94
ABCA3Q99758 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC39.67■■■■□ 3.94
ABCA3Q99758 RPS2P35-201ENST00000443417 897 ntBASIC39.65■■■■□ 3.94
ABCA3Q99758 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC39.65■■■■□ 3.94
ABCA3Q99758 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC39.64■■■■□ 3.94
ABCA3Q99758 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC39.64■■■■□ 3.94
ABCA3Q99758 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC39.64■■■■□ 3.94
ABCA3Q99758 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC39.63■■■■□ 3.93
ABCA3Q99758 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
ABCA3Q99758 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC39.57■■■■□ 3.92
ABCA3Q99758 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC39.57■■■■□ 3.92
ABCA3Q99758 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC39.53■■■■□ 3.92
ABCA3Q99758 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC39.51■■■■□ 3.92
ABCA3Q99758 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC39.5■■■■□ 3.91
ABCA3Q99758 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
ABCA3Q99758 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC39.45■■■■□ 3.91
ABCA3Q99758 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC39.45■■■■□ 3.91
ABCA3Q99758 KLF16-203ENST00000592313 508 ntTSL 3 BASIC39.45■■■■□ 3.91
ABCA3Q99758 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC39.43■■■■□ 3.9
ABCA3Q99758 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC39.42■■■■□ 3.9
ABCA3Q99758 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC39.41■■■■□ 3.9
ABCA3Q99758 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC39.4■■■■□ 3.9
ABCA3Q99758 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
ABCA3Q99758 AL162393.1-201ENST00000437852 946 ntBASIC39.32■■■■□ 3.89
ABCA3Q99758 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC39.31■■■■□ 3.88
ABCA3Q99758 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC39.31■■■■□ 3.88
ABCA3Q99758 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC39.31■■■■□ 3.88
ABCA3Q99758 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC39.26■■■■□ 3.88
ABCA3Q99758 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
ABCA3Q99758 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC39.15■■■■□ 3.86
ABCA3Q99758 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC39.14■■■■□ 3.86
ABCA3Q99758 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
ABCA3Q99758 NRG1-221ENST00000614767 762 ntTSL 5 BASIC39.05■■■■□ 3.84
ABCA3Q99758 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC39.04■■■■□ 3.84
ABCA3Q99758 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC39■■■■□ 3.83
ABCA3Q99758 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC38.97■■■■□ 3.83
ABCA3Q99758 CAHM-201ENST00000604200 896 ntBASIC38.96■■■■□ 3.83
ABCA3Q99758 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC38.95■■■■□ 3.83
ABCA3Q99758 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
ABCA3Q99758 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC38.92■■■■□ 3.82
ABCA3Q99758 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
ABCA3Q99758 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
ABCA3Q99758 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC38.89■■■■□ 3.82
ABCA3Q99758 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC38.89■■■■□ 3.82
ABCA3Q99758 HNRNPLP2-201ENST00000568980 1570 ntBASIC38.89■■■■□ 3.82
ABCA3Q99758 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.82
ABCA3Q99758 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC38.88■■■■□ 3.81
ABCA3Q99758 AL391121.1-201ENST00000607967 1349 ntBASIC38.87■■■■□ 3.81
ABCA3Q99758 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC38.87■■■■□ 3.81
ABCA3Q99758 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
ABCA3Q99758 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC38.82■■■■□ 3.8
ABCA3Q99758 AC145285.7-201ENST00000614819 1539 ntBASIC38.81■■■■□ 3.8
ABCA3Q99758 AP006261.1-201ENST00000584783 668 ntBASIC38.8■■■■□ 3.8
ABCA3Q99758 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
ABCA3Q99758 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
ABCA3Q99758 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
ABCA3Q99758 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
ABCA3Q99758 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
ABCA3Q99758 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC38.74■■■■□ 3.79
ABCA3Q99758 AL133380.1-201ENST00000506013 324 ntBASIC38.74■■■■□ 3.79
ABCA3Q99758 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC38.74■■■■□ 3.79
ABCA3Q99758 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC38.7■■■■□ 3.79
ABCA3Q99758 MVK-208ENST00000539696 608 ntTSL 5 BASIC38.7■■■■□ 3.79
ABCA3Q99758 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC38.69■■■■□ 3.78
ABCA3Q99758 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
ABCA3Q99758 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
ABCA3Q99758 ILK-212ENST00000532063 1617 ntTSL 2 BASIC38.66■■■■□ 3.78
ABCA3Q99758 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC38.65■■■■□ 3.78
ABCA3Q99758 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms