Protein–RNA interactions for Protein: Q8NET4

RTL9, Retrotransposon Gag-like protein 9, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL9Q8NET4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC36.34■■■■□ 3.41
RTL9Q8NET4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC36.31■■■■□ 3.4
RTL9Q8NET4 AL031258.1-201ENST00000623562 325 ntBASIC36.28■■■■□ 3.4
RTL9Q8NET4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC36.27■■■■□ 3.4
RTL9Q8NET4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.27■■■■□ 3.4
RTL9Q8NET4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
RTL9Q8NET4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC36.17■■■■□ 3.38
RTL9Q8NET4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
RTL9Q8NET4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
RTL9Q8NET4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC36.1■■■■□ 3.37
RTL9Q8NET4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC36.07■■■■□ 3.36
RTL9Q8NET4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
RTL9Q8NET4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
RTL9Q8NET4 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC36.02■■■■□ 3.36
RTL9Q8NET4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC36■■■■□ 3.35
RTL9Q8NET4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC36■■■■□ 3.35
RTL9Q8NET4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC35.99■■■■□ 3.35
RTL9Q8NET4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC35.97■■■■□ 3.35
RTL9Q8NET4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
RTL9Q8NET4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC35.95■■■■□ 3.35
RTL9Q8NET4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
RTL9Q8NET4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
RTL9Q8NET4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
RTL9Q8NET4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC35.88■■■■□ 3.33
RTL9Q8NET4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
RTL9Q8NET4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC35.85■■■■□ 3.33
RTL9Q8NET4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
RTL9Q8NET4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC35.82■■■■□ 3.32
RTL9Q8NET4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC35.79■■■■□ 3.32
RTL9Q8NET4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC35.78■■■■□ 3.32
RTL9Q8NET4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC35.75■■■■□ 3.31
RTL9Q8NET4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC35.73■■■■□ 3.31
RTL9Q8NET4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
RTL9Q8NET4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC35.72■■■■□ 3.31
RTL9Q8NET4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
RTL9Q8NET4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC35.7■■■■□ 3.31
RTL9Q8NET4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
RTL9Q8NET4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC35.63■■■■□ 3.29
RTL9Q8NET4 AC145285.7-201ENST00000614819 1539 ntBASIC35.62■■■■□ 3.29
RTL9Q8NET4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.62■■■■□ 3.29
RTL9Q8NET4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC35.61■■■■□ 3.29
RTL9Q8NET4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC35.59■■■■□ 3.29
RTL9Q8NET4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC35.58■■■■□ 3.29
RTL9Q8NET4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC35.56■■■■□ 3.28
RTL9Q8NET4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
RTL9Q8NET4 RARRES2P7-201ENST00000567349 469 ntBASIC35.52■■■■□ 3.28
RTL9Q8NET4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
RTL9Q8NET4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC35.51■■■■□ 3.27
RTL9Q8NET4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC35.47■■■■□ 3.27
RTL9Q8NET4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC35.44■■■■□ 3.26
RTL9Q8NET4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC35.43■■■■□ 3.26
RTL9Q8NET4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
RTL9Q8NET4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC35.41■■■■□ 3.26
RTL9Q8NET4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC35.41■■■■□ 3.26
RTL9Q8NET4 MVK-208ENST00000539696 608 ntTSL 5 BASIC35.4■■■■□ 3.26
RTL9Q8NET4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC35.4■■■■□ 3.26
RTL9Q8NET4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC35.4■■■■□ 3.26
RTL9Q8NET4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.39■■■■□ 3.26
RTL9Q8NET4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.38■■■■□ 3.25
RTL9Q8NET4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC35.37■■■■□ 3.25
RTL9Q8NET4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC35.36■■■■□ 3.25
RTL9Q8NET4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
RTL9Q8NET4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.31■■■■□ 3.24
RTL9Q8NET4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
RTL9Q8NET4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
RTL9Q8NET4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.28■■■■□ 3.24
RTL9Q8NET4 AC136428.2-201ENST00000563187 214 ntBASIC35.28■■■■□ 3.24
RTL9Q8NET4 SETD8P1-201ENST00000623146 1180 ntBASIC35.28■■■■□ 3.24
RTL9Q8NET4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
RTL9Q8NET4 AC097358.2-201ENST00000607541 1159 ntBASIC35.24■■■■□ 3.23
RTL9Q8NET4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
RTL9Q8NET4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
RTL9Q8NET4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
RTL9Q8NET4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC35.19■■■■□ 3.22
RTL9Q8NET4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
RTL9Q8NET4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC35.16■■■■□ 3.22
RTL9Q8NET4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
RTL9Q8NET4 SUZ12P1-203ENST00000578195 985 ntBASIC35.11■■■■□ 3.21
RTL9Q8NET4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC35.1■■■■□ 3.21
RTL9Q8NET4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
RTL9Q8NET4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.07■■■■□ 3.2
RTL9Q8NET4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
RTL9Q8NET4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
RTL9Q8NET4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
RTL9Q8NET4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC35.05■■■■□ 3.2
RTL9Q8NET4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
RTL9Q8NET4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC35.04■■■■□ 3.2
RTL9Q8NET4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC35.02■■■■□ 3.2
RTL9Q8NET4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
RTL9Q8NET4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
RTL9Q8NET4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35■■■■□ 3.19
RTL9Q8NET4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC34.99■■■■□ 3.19
RTL9Q8NET4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
RTL9Q8NET4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC34.97■■■■□ 3.19
RTL9Q8NET4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
RTL9Q8NET4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC34.95■■■■□ 3.19
RTL9Q8NET4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC34.92■■■■□ 3.18
RTL9Q8NET4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC34.91■■■■□ 3.18
RTL9Q8NET4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
RTL9Q8NET4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC34.88■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms