Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.54■■□□□ 1.84
RFC3P40938 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
RFC3P40938 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
RFC3P40938 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
RFC3P40938 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
RFC3P40938 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
RFC3P40938 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
RFC3P40938 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
RFC3P40938 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
RFC3P40938 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.41■■□□□ 1.82
RFC3P40938 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RFC3P40938 AL031258.1-201ENST00000623562 325 ntBASIC26.39■■□□□ 1.82
RFC3P40938 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.39■■□□□ 1.81
RFC3P40938 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RFC3P40938 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RFC3P40938 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.3■■□□□ 1.8
RFC3P40938 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC26.29■■□□□ 1.8
RFC3P40938 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
RFC3P40938 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.22■■□□□ 1.79
RFC3P40938 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.22■■□□□ 1.79
RFC3P40938 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
RFC3P40938 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.2■■□□□ 1.78
RFC3P40938 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RFC3P40938 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.19■■□□□ 1.78
RFC3P40938 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RFC3P40938 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RFC3P40938 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
RFC3P40938 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RFC3P40938 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RFC3P40938 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC26.11■■□□□ 1.77
RFC3P40938 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
RFC3P40938 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
RFC3P40938 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.08■■□□□ 1.76
RFC3P40938 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
RFC3P40938 AC145285.7-201ENST00000614819 1539 ntBASIC26.07■■□□□ 1.76
RFC3P40938 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
RFC3P40938 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
RFC3P40938 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.05■■□□□ 1.76
RFC3P40938 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
RFC3P40938 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.04■■□□□ 1.76
RFC3P40938 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
RFC3P40938 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.03■■□□□ 1.76
RFC3P40938 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.02■■□□□ 1.76
RFC3P40938 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.02■■□□□ 1.76
RFC3P40938 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
RFC3P40938 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
RFC3P40938 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
RFC3P40938 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
RFC3P40938 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.96■■□□□ 1.75
RFC3P40938 RARRES2P7-201ENST00000567349 469 ntBASIC25.93■■□□□ 1.74
RFC3P40938 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
RFC3P40938 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
RFC3P40938 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
RFC3P40938 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
RFC3P40938 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.74
RFC3P40938 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
RFC3P40938 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
RFC3P40938 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.84■■□□□ 1.73
RFC3P40938 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RFC3P40938 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
RFC3P40938 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.82■■□□□ 1.72
RFC3P40938 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.8■■□□□ 1.72
RFC3P40938 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC25.8■■□□□ 1.72
RFC3P40938 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.79■■□□□ 1.72
RFC3P40938 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.79■■□□□ 1.72
RFC3P40938 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
RFC3P40938 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.77■■□□□ 1.72
RFC3P40938 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
RFC3P40938 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
RFC3P40938 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.76■■□□□ 1.71
RFC3P40938 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
RFC3P40938 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
RFC3P40938 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
RFC3P40938 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RFC3P40938 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC25.73■■□□□ 1.71
RFC3P40938 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.72■■□□□ 1.71
RFC3P40938 SETD8P1-201ENST00000623146 1180 ntBASIC25.72■■□□□ 1.71
RFC3P40938 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
RFC3P40938 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.7■■□□□ 1.7
RFC3P40938 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
RFC3P40938 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RFC3P40938 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.69■■□□□ 1.7
RFC3P40938 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.68■■□□□ 1.7
RFC3P40938 AC097358.2-201ENST00000607541 1159 ntBASIC25.68■■□□□ 1.7
RFC3P40938 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RFC3P40938 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.66■■□□□ 1.7
RFC3P40938 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC25.66■■□□□ 1.7
RFC3P40938 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RFC3P40938 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RFC3P40938 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RFC3P40938 AC136428.2-201ENST00000563187 214 ntBASIC25.61■■□□□ 1.69
RFC3P40938 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RFC3P40938 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RFC3P40938 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RFC3P40938 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RFC3P40938 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RFC3P40938 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.56■■□□□ 1.68
RFC3P40938 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC3P40938 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.53■■□□□ 1.68
RFC3P40938 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms