Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC40.44■■■■■ 4.06
RXRBP28702 AC097358.2-201ENST00000607541 1159 ntBASIC40.43■■■■■ 4.06
RXRBP28702 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC40.38■■■■■ 4.05
RXRBP28702 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC40.32■■■■■ 4.04
RXRBP28702 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
RXRBP28702 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC40.26■■■■■ 4.04
RXRBP28702 SUZ12P1-203ENST00000578195 985 ntBASIC40.26■■■■■ 4.04
RXRBP28702 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC40.23■■■■■ 4.03
RXRBP28702 AC136428.2-201ENST00000563187 214 ntBASIC40.2■■■■■ 4.03
RXRBP28702 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC40.17■■■■■ 4.02
RXRBP28702 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
RXRBP28702 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC40.14■■■■■ 4.02
RXRBP28702 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC40.09■■■■■ 4.01
RXRBP28702 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
RXRBP28702 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC40.04■■■■■ 4
RXRBP28702 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC40.01■■■■■ 4
RXRBP28702 SETD8P1-201ENST00000623146 1180 ntBASIC40■■■■□ 3.99
RXRBP28702 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC39.99■■■■□ 3.99
RXRBP28702 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC39.98■■■■□ 3.99
RXRBP28702 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
RXRBP28702 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC39.92■■■■□ 3.98
RXRBP28702 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC39.88■■■■□ 3.97
RXRBP28702 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC39.87■■■■□ 3.97
RXRBP28702 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
RXRBP28702 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
RXRBP28702 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC39.8■■■■□ 3.96
RXRBP28702 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
RXRBP28702 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC39.75■■■■□ 3.95
RXRBP28702 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC39.75■■■■□ 3.95
RXRBP28702 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC39.75■■■■□ 3.95
RXRBP28702 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC39.73■■■■□ 3.95
RXRBP28702 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
RXRBP28702 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC39.69■■■■□ 3.94
RXRBP28702 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
RXRBP28702 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC39.64■■■■□ 3.94
RXRBP28702 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC39.63■■■■□ 3.93
RXRBP28702 AL162393.1-201ENST00000437852 946 ntBASIC39.62■■■■□ 3.93
RXRBP28702 MIR7108-201ENST00000614319 87 ntBASIC39.62■■■■□ 3.93
RXRBP28702 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC39.6■■■■□ 3.93
RXRBP28702 KLF16-203ENST00000592313 508 ntTSL 3 BASIC39.59■■■■□ 3.93
RXRBP28702 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC39.58■■■■□ 3.93
RXRBP28702 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC39.57■■■■□ 3.93
RXRBP28702 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC39.57■■■■□ 3.92
RXRBP28702 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
RXRBP28702 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC39.52■■■■□ 3.92
RXRBP28702 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC39.48■■■■□ 3.91
RXRBP28702 NRG1-221ENST00000614767 762 ntTSL 5 BASIC39.48■■■■□ 3.91
RXRBP28702 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
RXRBP28702 ABHD17AP4-201ENST00000411545 909 ntBASIC39.45■■■■□ 3.91
RXRBP28702 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC39.45■■■■□ 3.91
RXRBP28702 EBPL-203ENST00000378270 579 ntTSL 2 BASIC39.41■■■■□ 3.9
RXRBP28702 PVT1-219ENST00000523427 938 ntTSL 3 BASIC39.41■■■■□ 3.9
RXRBP28702 AP006261.1-201ENST00000584783 668 ntBASIC39.41■■■■□ 3.9
RXRBP28702 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC39.34■■■■□ 3.89
RXRBP28702 MBP-237ENST00000579129 1052 ntTSL 5 BASIC39.34■■■■□ 3.89
RXRBP28702 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC39.32■■■■□ 3.89
RXRBP28702 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC39.32■■■■□ 3.89
RXRBP28702 HLA-V-202ENST00000446817 847 ntBASIC39.31■■■■□ 3.88
RXRBP28702 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC39.28■■■■□ 3.88
RXRBP28702 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
RXRBP28702 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC39.26■■■■□ 3.88
RXRBP28702 CAHM-201ENST00000604200 896 ntBASIC39.2■■■■□ 3.87
RXRBP28702 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
RXRBP28702 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC39.19■■■■□ 3.86
RXRBP28702 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC39.16■■■■□ 3.86
RXRBP28702 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC39.16■■■■□ 3.86
RXRBP28702 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC39.16■■■■□ 3.86
RXRBP28702 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC39.12■■■■□ 3.85
RXRBP28702 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
RXRBP28702 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC39.08■■■■□ 3.85
RXRBP28702 MLEC-202ENST00000412616 841 ntTSL 3 BASIC39.07■■■■□ 3.85
RXRBP28702 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC39.07■■■■□ 3.85
RXRBP28702 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
RXRBP28702 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC39.06■■■■□ 3.84
RXRBP28702 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC39.05■■■■□ 3.84
RXRBP28702 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
RXRBP28702 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC39.01■■■■□ 3.84
RXRBP28702 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
RXRBP28702 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
RXRBP28702 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
RXRBP28702 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC38.93■■■■□ 3.82
RXRBP28702 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC38.91■■■■□ 3.82
RXRBP28702 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
RXRBP28702 HNRNPLP2-201ENST00000568980 1570 ntBASIC38.88■■■■□ 3.81
RXRBP28702 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC38.88■■■■□ 3.81
RXRBP28702 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
RXRBP28702 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC38.86■■■■□ 3.81
RXRBP28702 AL391121.1-201ENST00000607967 1349 ntBASIC38.84■■■■□ 3.81
RXRBP28702 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
RXRBP28702 MIR3665-201ENST00000578708 105 ntBASIC38.8■■■■□ 3.8
RXRBP28702 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC38.78■■■■□ 3.8
RXRBP28702 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC38.77■■■■□ 3.8
RXRBP28702 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
RXRBP28702 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC38.76■■■■□ 3.8
RXRBP28702 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC38.75■■■■□ 3.79
RXRBP28702 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
RXRBP28702 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC38.71■■■■□ 3.79
RXRBP28702 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC38.7■■■■□ 3.79
RXRBP28702 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC38.7■■■■□ 3.79
RXRBP28702 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC38.69■■■■□ 3.78
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms