Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
COL1A1P02452 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC35.55■■■■□ 3.28
COL1A1P02452 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC35.53■■■■□ 3.28
COL1A1P02452 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
COL1A1P02452 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
COL1A1P02452 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
COL1A1P02452 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
COL1A1P02452 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC35.38■■■■□ 3.25
COL1A1P02452 AL031258.1-201ENST00000623562 325 ntBASIC35.38■■■■□ 3.25
COL1A1P02452 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC35.37■■■■□ 3.25
COL1A1P02452 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
COL1A1P02452 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC35.32■■■■□ 3.24
COL1A1P02452 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
COL1A1P02452 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
COL1A1P02452 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
COL1A1P02452 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC35.21■■■■□ 3.23
COL1A1P02452 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
COL1A1P02452 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC35.2■■■■□ 3.23
COL1A1P02452 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC35.2■■■■□ 3.23
COL1A1P02452 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
COL1A1P02452 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC35.16■■■■□ 3.22
COL1A1P02452 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL1A1P02452 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC35.11■■■■□ 3.21
COL1A1P02452 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC35.11■■■■□ 3.21
COL1A1P02452 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC35.07■■■■□ 3.21
COL1A1P02452 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC35.05■■■■□ 3.2
COL1A1P02452 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
COL1A1P02452 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
COL1A1P02452 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC35■■■■□ 3.19
COL1A1P02452 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC34.97■■■■□ 3.19
COL1A1P02452 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC34.97■■■■□ 3.19
COL1A1P02452 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC34.97■■■■□ 3.19
COL1A1P02452 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
COL1A1P02452 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC34.95■■■■□ 3.19
COL1A1P02452 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
COL1A1P02452 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.94■■■■□ 3.18
COL1A1P02452 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC34.92■■■■□ 3.18
COL1A1P02452 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
COL1A1P02452 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC34.92■■■■□ 3.18
COL1A1P02452 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC34.91■■■■□ 3.18
COL1A1P02452 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC34.9■■■■□ 3.18
COL1A1P02452 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC34.9■■■■□ 3.18
COL1A1P02452 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC34.9■■■■□ 3.18
COL1A1P02452 AC145285.7-201ENST00000614819 1539 ntBASIC34.88■■■■□ 3.18
COL1A1P02452 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
COL1A1P02452 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.87■■■■□ 3.17
COL1A1P02452 RARRES2P7-201ENST00000567349 469 ntBASIC34.87■■■■□ 3.17
COL1A1P02452 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
COL1A1P02452 EBPL-203ENST00000378270 579 ntTSL 2 BASIC34.84■■■■□ 3.17
COL1A1P02452 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
COL1A1P02452 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.81■■■■□ 3.16
COL1A1P02452 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC34.73■■■■□ 3.15
COL1A1P02452 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC34.72■■■■□ 3.15
COL1A1P02452 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.72■■■■□ 3.15
COL1A1P02452 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
COL1A1P02452 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.66■■■■□ 3.14
COL1A1P02452 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
COL1A1P02452 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.65■■■■□ 3.14
COL1A1P02452 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC34.65■■■■□ 3.14
COL1A1P02452 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC34.64■■■■□ 3.14
COL1A1P02452 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
COL1A1P02452 AC136428.2-201ENST00000563187 214 ntBASIC34.58■■■■□ 3.13
COL1A1P02452 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.58■■■■□ 3.13
COL1A1P02452 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC34.58■■■■□ 3.13
COL1A1P02452 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC34.56■■■■□ 3.12
COL1A1P02452 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
COL1A1P02452 AC097358.2-201ENST00000607541 1159 ntBASIC34.55■■■■□ 3.12
COL1A1P02452 SETD8P1-201ENST00000623146 1180 ntBASIC34.52■■■■□ 3.12
COL1A1P02452 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
COL1A1P02452 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC34.5■■■■□ 3.11
COL1A1P02452 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC34.5■■■■□ 3.11
COL1A1P02452 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC34.49■■■■□ 3.11
COL1A1P02452 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
COL1A1P02452 MVK-208ENST00000539696 608 ntTSL 5 BASIC34.47■■■■□ 3.11
COL1A1P02452 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC34.47■■■■□ 3.11
COL1A1P02452 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC34.46■■■■□ 3.11
COL1A1P02452 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC34.46■■■■□ 3.11
COL1A1P02452 KLF16-203ENST00000592313 508 ntTSL 3 BASIC34.45■■■■□ 3.1
COL1A1P02452 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
COL1A1P02452 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
COL1A1P02452 SUZ12P1-203ENST00000578195 985 ntBASIC34.43■■■■□ 3.1
COL1A1P02452 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC34.42■■■■□ 3.1
COL1A1P02452 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC34.4■■■■□ 3.1
COL1A1P02452 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
COL1A1P02452 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC34.37■■■■□ 3.09
COL1A1P02452 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC34.36■■■■□ 3.09
COL1A1P02452 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
COL1A1P02452 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
COL1A1P02452 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
COL1A1P02452 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC34.33■■■■□ 3.09
COL1A1P02452 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
COL1A1P02452 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC34.3■■■■□ 3.08
COL1A1P02452 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC34.3■■■■□ 3.08
COL1A1P02452 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL1A1P02452 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC34.26■■■■□ 3.08
COL1A1P02452 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
COL1A1P02452 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC34.23■■■■□ 3.07
COL1A1P02452 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC34.2■■■■□ 3.06
COL1A1P02452 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
COL1A1P02452 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC34.18■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms