Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USH2AO75445 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
USH2AO75445 AC136428.2-201ENST00000563187 214 ntBASIC13.69□□□□□ -0.22
USH2AO75445 AC097358.2-201ENST00000607541 1159 ntBASIC13.67□□□□□ -0.22
USH2AO75445 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
USH2AO75445 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC13.63□□□□□ -0.23
USH2AO75445 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
USH2AO75445 NRG1-221ENST00000614767 762 ntTSL 5 BASIC13.62□□□□□ -0.23
USH2AO75445 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC13.61□□□□□ -0.23
USH2AO75445 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
USH2AO75445 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC13.59□□□□□ -0.23
USH2AO75445 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC13.58□□□□□ -0.24
USH2AO75445 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
USH2AO75445 AL162393.1-201ENST00000437852 946 ntBASIC13.56□□□□□ -0.24
USH2AO75445 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USH2AO75445 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC13.56□□□□□ -0.24
USH2AO75445 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USH2AO75445 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC13.55□□□□□ -0.24
USH2AO75445 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USH2AO75445 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
USH2AO75445 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
USH2AO75445 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
USH2AO75445 SETD8P1-201ENST00000623146 1180 ntBASIC13.49□□□□□ -0.25
USH2AO75445 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
USH2AO75445 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
USH2AO75445 HLA-V-202ENST00000446817 847 ntBASIC13.48□□□□□ -0.25
USH2AO75445 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
USH2AO75445 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC13.45□□□□□ -0.26
USH2AO75445 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
USH2AO75445 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC13.45□□□□□ -0.26
USH2AO75445 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
USH2AO75445 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC13.43□□□□□ -0.26
USH2AO75445 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
USH2AO75445 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
USH2AO75445 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
USH2AO75445 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC13.41□□□□□ -0.26
USH2AO75445 ABHD17AP4-201ENST00000411545 909 ntBASIC13.4□□□□□ -0.26
USH2AO75445 PVT1-219ENST00000523427 938 ntTSL 3 BASIC13.4□□□□□ -0.26
USH2AO75445 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
USH2AO75445 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
USH2AO75445 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
USH2AO75445 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
USH2AO75445 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC13.38□□□□□ -0.27
USH2AO75445 MBP-237ENST00000579129 1052 ntTSL 5 BASIC13.36□□□□□ -0.27
USH2AO75445 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
USH2AO75445 AP006261.1-201ENST00000584783 668 ntBASIC13.35□□□□□ -0.27
USH2AO75445 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
USH2AO75445 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USH2AO75445 MIR7108-201ENST00000614319 87 ntBASIC13.34□□□□□ -0.27
USH2AO75445 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC13.34□□□□□ -0.27
USH2AO75445 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
USH2AO75445 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC13.33□□□□□ -0.28
USH2AO75445 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USH2AO75445 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USH2AO75445 CAHM-201ENST00000604200 896 ntBASIC13.31□□□□□ -0.28
USH2AO75445 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC13.29□□□□□ -0.28
USH2AO75445 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
USH2AO75445 EBPL-203ENST00000378270 579 ntTSL 2 BASIC13.27□□□□□ -0.28
USH2AO75445 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC13.27□□□□□ -0.29
USH2AO75445 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
USH2AO75445 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC13.26□□□□□ -0.29
USH2AO75445 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
USH2AO75445 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
USH2AO75445 AL391121.1-201ENST00000607967 1349 ntBASIC13.25□□□□□ -0.29
USH2AO75445 KLF16-203ENST00000592313 508 ntTSL 3 BASIC13.25□□□□□ -0.29
USH2AO75445 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC13.24□□□□□ -0.29
USH2AO75445 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC13.24□□□□□ -0.29
USH2AO75445 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
USH2AO75445 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
USH2AO75445 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
USH2AO75445 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
USH2AO75445 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
USH2AO75445 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
USH2AO75445 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC13.21□□□□□ -0.29
USH2AO75445 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
USH2AO75445 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
USH2AO75445 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
USH2AO75445 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
USH2AO75445 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC13.18□□□□□ -0.3
USH2AO75445 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC13.18□□□□□ -0.3
USH2AO75445 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
USH2AO75445 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
USH2AO75445 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC13.17□□□□□ -0.3
USH2AO75445 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USH2AO75445 HNRNPLP2-201ENST00000568980 1570 ntBASIC13.17□□□□□ -0.3
USH2AO75445 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USH2AO75445 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
USH2AO75445 AC087741.3-201ENST00000624270 1347 ntBASIC13.14□□□□□ -0.31
USH2AO75445 RPS2-202ENST00000526522 924 ntTSL 2 BASIC13.14□□□□□ -0.31
USH2AO75445 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC13.12□□□□□ -0.31
USH2AO75445 MIR3665-201ENST00000578708 105 ntBASIC13.12□□□□□ -0.31
USH2AO75445 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC13.12□□□□□ -0.31
USH2AO75445 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
USH2AO75445 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC13.11□□□□□ -0.31
USH2AO75445 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
USH2AO75445 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
USH2AO75445 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
USH2AO75445 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
USH2AO75445 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
USH2AO75445 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 7.3 ms