Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TRAV17A0A0B4J275 AL031258.1-201ENST00000623562 325 ntBASIC26.7■■□□□ 1.86
TRAV17A0A0B4J275 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
TRAV17A0A0B4J275 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRAV17A0A0B4J275 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TRAV17A0A0B4J275 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TRAV17A0A0B4J275 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.62■■□□□ 1.85
TRAV17A0A0B4J275 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAV17A0A0B4J275 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAV17A0A0B4J275 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.55■■□□□ 1.84
TRAV17A0A0B4J275 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.55■■□□□ 1.84
TRAV17A0A0B4J275 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
TRAV17A0A0B4J275 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
TRAV17A0A0B4J275 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
TRAV17A0A0B4J275 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
TRAV17A0A0B4J275 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.48■■□□□ 1.83
TRAV17A0A0B4J275 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.47■■□□□ 1.83
TRAV17A0A0B4J275 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TRAV17A0A0B4J275 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
TRAV17A0A0B4J275 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
TRAV17A0A0B4J275 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.4■■□□□ 1.82
TRAV17A0A0B4J275 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.37■■□□□ 1.81
TRAV17A0A0B4J275 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRAV17A0A0B4J275 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.35■■□□□ 1.81
TRAV17A0A0B4J275 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TRAV17A0A0B4J275 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRAV17A0A0B4J275 RARRES2P7-201ENST00000567349 469 ntBASIC26.32■■□□□ 1.8
TRAV17A0A0B4J275 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.32■■□□□ 1.8
TRAV17A0A0B4J275 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRAV17A0A0B4J275 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.31■■□□□ 1.8
TRAV17A0A0B4J275 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRAV17A0A0B4J275 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.26■■□□□ 1.79
TRAV17A0A0B4J275 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRAV17A0A0B4J275 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
TRAV17A0A0B4J275 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRAV17A0A0B4J275 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
TRAV17A0A0B4J275 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
TRAV17A0A0B4J275 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
TRAV17A0A0B4J275 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.19■■□□□ 1.78
TRAV17A0A0B4J275 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.19■■□□□ 1.78
TRAV17A0A0B4J275 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.17■■□□□ 1.78
TRAV17A0A0B4J275 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.17■■□□□ 1.78
TRAV17A0A0B4J275 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.17■■□□□ 1.78
TRAV17A0A0B4J275 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
TRAV17A0A0B4J275 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26.15■■□□□ 1.78
TRAV17A0A0B4J275 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
TRAV17A0A0B4J275 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
TRAV17A0A0B4J275 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.12■■□□□ 1.77
TRAV17A0A0B4J275 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.12■■□□□ 1.77
TRAV17A0A0B4J275 SETD8P1-201ENST00000623146 1180 ntBASIC26.08■■□□□ 1.77
TRAV17A0A0B4J275 AC097358.2-201ENST00000607541 1159 ntBASIC26.07■■□□□ 1.76
TRAV17A0A0B4J275 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.07■■□□□ 1.76
TRAV17A0A0B4J275 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.05■■□□□ 1.76
TRAV17A0A0B4J275 AC145285.7-201ENST00000614819 1539 ntBASIC26.04■■□□□ 1.76
TRAV17A0A0B4J275 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TRAV17A0A0B4J275 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
TRAV17A0A0B4J275 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.02■■□□□ 1.76
TRAV17A0A0B4J275 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.02■■□□□ 1.76
TRAV17A0A0B4J275 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC25.97■■□□□ 1.75
TRAV17A0A0B4J275 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TRAV17A0A0B4J275 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TRAV17A0A0B4J275 AC136428.2-201ENST00000563187 214 ntBASIC25.95■■□□□ 1.74
TRAV17A0A0B4J275 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC25.94■■□□□ 1.74
TRAV17A0A0B4J275 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
TRAV17A0A0B4J275 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.91■■□□□ 1.74
TRAV17A0A0B4J275 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.9■■□□□ 1.74
TRAV17A0A0B4J275 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
TRAV17A0A0B4J275 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TRAV17A0A0B4J275 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TRAV17A0A0B4J275 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.83■■□□□ 1.73
TRAV17A0A0B4J275 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
TRAV17A0A0B4J275 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.72
TRAV17A0A0B4J275 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRAV17A0A0B4J275 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.81■■□□□ 1.72
TRAV17A0A0B4J275 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.81■■□□□ 1.72
TRAV17A0A0B4J275 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRAV17A0A0B4J275 SUZ12P1-203ENST00000578195 985 ntBASIC25.8■■□□□ 1.72
TRAV17A0A0B4J275 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
TRAV17A0A0B4J275 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TRAV17A0A0B4J275 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
TRAV17A0A0B4J275 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRAV17A0A0B4J275 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.74■■□□□ 1.71
TRAV17A0A0B4J275 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.74■■□□□ 1.71
TRAV17A0A0B4J275 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.74■■□□□ 1.71
TRAV17A0A0B4J275 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
TRAV17A0A0B4J275 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TRAV17A0A0B4J275 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
TRAV17A0A0B4J275 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TRAV17A0A0B4J275 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRAV17A0A0B4J275 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAV17A0A0B4J275 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TRAV17A0A0B4J275 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
TRAV17A0A0B4J275 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TRAV17A0A0B4J275 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TRAV17A0A0B4J275 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TRAV17A0A0B4J275 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TRAV17A0A0B4J275 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.62■■□□□ 1.69
TRAV17A0A0B4J275 CAHM-201ENST00000604200 896 ntBASIC25.6■■□□□ 1.69
TRAV17A0A0B4J275 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TRAV17A0A0B4J275 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms