Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP005117.1-201ENST00000584346 1413 ntBASIC13.38□□□□□ -0.27
HOXA1P49639 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC13.38□□□□□ -0.27
HOXA1P49639 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXA1P49639 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 BEND3P1-201ENST00000421591 1944 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 AL031731.1-201ENST00000642131 2094 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 AC138969.2-201ENST00000532739 9932 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 BET1L-202ENST00000332865 533 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXA1P49639 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 FAM210CP-201ENST00000445714 574 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 MPI-205ENST00000562606 1052 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXA1P49639 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXA1P49639 MPDU1-223ENST00000582151 728 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.37□□□□□ -0.27
HOXA1P49639 AC064862.7-201ENST00000604520 867 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 AP001269.4-201ENST00000609611 512 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 AC092119.3-201ENST00000612618 583 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 AL139288.1-201ENST00000623748 933 ntBASIC13.37□□□□□ -0.27
HOXA1P49639 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXA1P49639 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HOXA1P49639 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXA1P49639 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 AC027601.5-201ENST00000624065 2482 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 AC117489.1-201ENST00000625169 3217 ntBASIC13.36□□□□□ -0.27
HOXA1P49639 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HOXA1P49639 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HOXA1P49639 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXA1P49639 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXA1P49639 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXA1P49639 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXA1P49639 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXA1P49639 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXA1P49639 MIR3180-1-201ENST00000580374 94 ntBASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms