Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX2-1P43699 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
NKX2-1P43699 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX2-1P43699 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.17□□□□□ -0.3
NKX2-1P43699 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX2-1P43699 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
NKX2-1P43699 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX2-1P43699 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX2-1P43699 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX2-1P43699 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.17□□□□□ -0.3
NKX2-1P43699 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
NKX2-1P43699 AC138969.2-201ENST00000532739 9932 ntBASIC13.16□□□□□ -0.3
NKX2-1P43699 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
NKX2-1P43699 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
NKX2-1P43699 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX2-1P43699 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX2-1P43699 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX2-1P43699 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 AL591684.3-201ENST00000605187 298 ntBASIC13.16□□□□□ -0.3
NKX2-1P43699 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX2-1P43699 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
NKX2-1P43699 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 AC126335.2-201ENST00000623362 4637 ntBASIC13.16□□□□□ -0.3
NKX2-1P43699 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX2-1P43699 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 AC129492.6-201ENST00000611383 1305 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
NKX2-1P43699 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.15□□□□□ -0.3
NKX2-1P43699 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
NKX2-1P43699 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 NUS1P2-201ENST00000417358 873 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX2-1P43699 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 KRT18P35-201ENST00000510488 1269 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX2-1P43699 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX2-1P43699 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
NKX2-1P43699 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 NKAPP1-205ENST00000585790 367 ntBASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms