Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 IGHV3-41-201ENST00000613121 348 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 REV3L-201ENST00000358835 10815 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 AL109954.1-202ENST00000564051 2148 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.95□□□□□ -0.34
HMGB3O15347 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 CHST6-201ENST00000332272 7957 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
HMGB3O15347 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.94□□□□□ -0.34
HMGB3O15347 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 POU5F1P6-201ENST00000466990 990 ntBASIC12.94□□□□□ -0.34
HMGB3O15347 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.94□□□□□ -0.34
HMGB3O15347 MIR4497-201ENST00000583208 89 ntBASIC12.94□□□□□ -0.34
HMGB3O15347 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.94□□□□□ -0.34
HMGB3O15347 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.94□□□□□ -0.34
HMGB3O15347 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HMGB3O15347 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 TCF4-202ENST00000356073 8317 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 LINC00982-205ENST00000420957 435 ntBASIC12.93□□□□□ -0.34
HMGB3O15347 TSPY22P-201ENST00000427496 604 ntBASIC12.93□□□□□ -0.34
HMGB3O15347 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.93□□□□□ -0.34
HMGB3O15347 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC12.93□□□□□ -0.34
HMGB3O15347 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms