Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TCRBV7S3A2A0A539 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 AP000842.3-202ENST00000569238 1080 ntBASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TCRBV7S3A2A0A539 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 FAM220BP-201ENST00000377689 816 ntBASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 MIR940-201ENST00000401276 94 ntBASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TCRBV7S3A2A0A539 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.24■□□□□ 0.19
TCRBV7S3A2A0A539 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TCRBV7S3A2A0A539 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TCRBV7S3A2A0A539 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TCRBV7S3A2A0A539 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.24■□□□□ 0.19
TCRBV7S3A2A0A539 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms