Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VIMP08670 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VIMP08670 SLC22A20-204ENST00000530038 1673 ntBASIC16.18■□□□□ 0.18
VIMP08670 CICP14-201ENST00000629111 2732 ntBASIC16.18■□□□□ 0.18
VIMP08670 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.17■□□□□ 0.18
VIMP08670 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 U82695.1-201ENST00000635752 1889 ntBASIC16.17■□□□□ 0.18
VIMP08670 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.17■□□□□ 0.18
VIMP08670 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.17■□□□□ 0.18
VIMP08670 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.17■□□□□ 0.18
VIMP08670 REXO1L3P-201ENST00000622202 1288 ntBASIC16.17■□□□□ 0.18
VIMP08670 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.17■□□□□ 0.18
VIMP08670 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.17■□□□□ 0.18
VIMP08670 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VIMP08670 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VIMP08670 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VIMP08670 AC005840.4-201ENST00000541242 2494 ntBASIC16.16■□□□□ 0.18
VIMP08670 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.16■□□□□ 0.18
VIMP08670 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.16■□□□□ 0.18
VIMP08670 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 AP005901.3-202ENST00000581653 237 ntBASIC16.16■□□□□ 0.18
VIMP08670 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.16■□□□□ 0.18
VIMP08670 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 AC010331.1-201ENST00000611423 582 ntBASIC16.16■□□□□ 0.18
VIMP08670 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.16■□□□□ 0.18
VIMP08670 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 AL137784.3-201ENST00000623858 2288 ntBASIC16.16■□□□□ 0.18
VIMP08670 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.16■□□□□ 0.18
VIMP08670 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VIMP08670 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VIMP08670 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms