Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AL139384.1-201ENST00000612143 3047 ntBASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 AC009090.5-201ENST00000624886 2285 ntBASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM35Q9UPQ4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 AC015922.1-201ENST00000421102 1152 ntBASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM35Q9UPQ4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 CICP13-201ENST00000422015 2789 ntBASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 MEIS3P1-201ENST00000495167 958 ntBASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 TERF1P3-201ENST00000505638 1227 ntBASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 SLED1-202ENST00000512051 380 ntBASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 CHCHD2P3-201ENST00000603038 451 ntBASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM35Q9UPQ4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC190387.1-201ENST00000551683 408 ntBASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AL158212.4-201ENST00000624062 1286 ntBASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM35Q9UPQ4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms