Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 MIR648-201ENST00000385046 94 ntBASIC17.79■□□□□ 0.44
VTA1Q9NP79 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 BCRP2-202ENST00000447763 634 ntBASIC17.79■□□□□ 0.44
VTA1Q9NP79 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 BCRP6-201ENST00000510112 632 ntBASIC17.79■□□□□ 0.44
VTA1Q9NP79 BCRP7-201ENST00000511549 544 ntBASIC17.79■□□□□ 0.44
VTA1Q9NP79 AP001889.1-201ENST00000525414 633 ntBASIC17.79■□□□□ 0.44
VTA1Q9NP79 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.79■□□□□ 0.44
VTA1Q9NP79 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VTA1Q9NP79 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 AL121723.1-201ENST00000445194 1519 ntBASIC17.78■□□□□ 0.44
VTA1Q9NP79 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 AL355864.2-201ENST00000447420 863 ntBASIC17.78■□□□□ 0.44
VTA1Q9NP79 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 CLUHP6-201ENST00000580789 941 ntBASIC17.78■□□□□ 0.44
VTA1Q9NP79 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VTA1Q9NP79 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.78■□□□□ 0.44
VTA1Q9NP79 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 REXO1L6P-201ENST00000603433 1515 ntBASIC17.77■□□□□ 0.44
VTA1Q9NP79 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 AC093525.8-201ENST00000624099 1342 ntBASIC17.77■□□□□ 0.44
VTA1Q9NP79 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.77■□□□□ 0.44
VTA1Q9NP79 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 AP001063.1-201ENST00000568332 529 ntBASIC17.77■□□□□ 0.44
VTA1Q9NP79 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.77■□□□□ 0.44
VTA1Q9NP79 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VTA1Q9NP79 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms