Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RHBDL3P58872 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
RHBDL3P58872 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.75■□□□□ 0.59
RHBDL3P58872 C1QBPP1-201ENST00000400117 770 ntBASIC18.75■□□□□ 0.59
RHBDL3P58872 SOCS2P1-201ENST00000417727 557 ntBASIC18.75■□□□□ 0.59
RHBDL3P58872 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 RPL13AP25-201ENST00000484130 612 ntBASIC18.75■□□□□ 0.59
RHBDL3P58872 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RHBDL3P58872 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
RHBDL3P58872 AC005252.2-201ENST00000624630 1141 ntBASIC18.75■□□□□ 0.59
RHBDL3P58872 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RHBDL3P58872 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
RHBDL3P58872 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.75■□□□□ 0.59
RHBDL3P58872 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RHBDL3P58872 MSTO2P-201ENST00000314835 1709 ntBASIC18.74■□□□□ 0.59
RHBDL3P58872 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
RHBDL3P58872 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 AC026410.3-201ENST00000514280 936 ntBASIC18.74■□□□□ 0.59
RHBDL3P58872 AP001889.1-201ENST00000525414 633 ntBASIC18.74■□□□□ 0.59
RHBDL3P58872 AP005482.1-201ENST00000563722 1273 ntBASIC18.74■□□□□ 0.59
RHBDL3P58872 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.74■□□□□ 0.59
RHBDL3P58872 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RHBDL3P58872 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 DRD5P1-201ENST00000456605 1438 ntBASIC18.74■□□□□ 0.59
RHBDL3P58872 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RHBDL3P58872 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 BOLA2P3-201ENST00000404566 256 ntBASIC18.73■□□□□ 0.59
RHBDL3P58872 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RHBDL3P58872 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.73■□□□□ 0.59
RHBDL3P58872 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.73■□□□□ 0.59
RHBDL3P58872 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.73■□□□□ 0.59
RHBDL3P58872 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.73■□□□□ 0.59
RHBDL3P58872 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 PDIA3P1-201ENST00000471856 1510 ntBASIC18.73■□□□□ 0.59
RHBDL3P58872 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RHBDL3P58872 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.73■□□□□ 0.59
RHBDL3P58872 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RHBDL3P58872 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
RHBDL3P58872 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
RHBDL3P58872 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
RHBDL3P58872 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RHBDL3P58872 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RHBDL3P58872 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RHBDL3P58872 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RHBDL3P58872 PRORSD1P-202ENST00000563365 2154 ntBASIC18.72■□□□□ 0.59
RHBDL3P58872 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RHBDL3P58872 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms