Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 AC120045.2-201ENST00000567334 178 ntBASIC17.84■□□□□ 0.45
VTA1Q9NP79 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 AC097359.3-201ENST00000603982 1210 ntBASIC17.84■□□□□ 0.45
VTA1Q9NP79 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
VTA1Q9NP79 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VTA1Q9NP79 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 PDIA3P1-201ENST00000471856 1510 ntBASIC17.83■□□□□ 0.45
VTA1Q9NP79 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.83■□□□□ 0.45
VTA1Q9NP79 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VTA1Q9NP79 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 PTP4A1P2-201ENST00000546033 454 ntBASIC17.83■□□□□ 0.44
VTA1Q9NP79 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 AC000095.1-201ENST00000603208 874 ntBASIC17.83■□□□□ 0.44
VTA1Q9NP79 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VTA1Q9NP79 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VTA1Q9NP79 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 AC005229.1-201ENST00000392885 409 ntBASIC17.82■□□□□ 0.44
VTA1Q9NP79 C1QBPP1-201ENST00000400117 770 ntBASIC17.82■□□□□ 0.44
VTA1Q9NP79 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VTA1Q9NP79 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.82■□□□□ 0.44
VTA1Q9NP79 KLF2P4-201ENST00000451959 1225 ntBASIC17.82■□□□□ 0.44
VTA1Q9NP79 VDAC1P7-201ENST00000462417 847 ntBASIC17.82■□□□□ 0.44
VTA1Q9NP79 AC022494.1-201ENST00000466044 728 ntBASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms