Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 WDR34-202ENST00000419989 745 ntTSL 525.42■■□□□ 1.664e-6■■■■■ 104.3
SF3B1O75533 GNPTG-205ENST00000527168 1317 ntTSL 525.33■■□□□ 1.653e-6■■■■■ 104.3
SF3B1O75533 PVT1-218ENST00000523328 343 ntTSL 1 (best)25.22■■□□□ 1.637e-6■■■■■ 104.3
SF3B1O75533 GNPTG-209ENST00000534197 420 ntTSL 324.3■■□□□ 1.483e-6■■■■■ 104.3
SF3B1O75533 GNPTG-208ENST00000529957 922 ntTSL 524.3■■□□□ 1.483e-6■■■■■ 104.3
SF3B1O75533 GNPTG-206ENST00000527876 550 ntTSL 424.05■■□□□ 1.443e-6■■■■■ 104.3
SF3B1O75533 GNPTG-207ENST00000529110 552 ntTSL 224.02■■□□□ 1.443e-6■■■■■ 104.3
SF3B1O75533 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.433e-6■■■■■ 104.3
SF3B1O75533 WDR34-203ENST00000451652 1039 ntTSL 223.27■■□□□ 1.324e-6■■■■■ 104.3
SF3B1O75533 GNPTG-202ENST00000526820 572 ntTSL 321.19■□□□□ 0.983e-6■■■■■ 104.3
SF3B1O75533 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.754e-6■■■■■ 104.3
SF3B1O75533 PVT1-220ENST00000524165 458 ntTSL 219.55■□□□□ 0.727e-6■■■■■ 104.3
SF3B1O75533 KIAA1191-204ENST00000503082 639 ntTSL 212.95□□□□□ -0.344e-6■■■■■ 104.3
SF3B1O75533 KIAA1191-205ENST00000504688 486 ntTSL 512.83□□□□□ -0.364e-6■■■■■ 104.3
SF3B1O75533 PVT1-215ENST00000522963 568 ntTSL 412.79□□□□□ -0.367e-6■■■■■ 104.3
SF3B1O75533 PVT1-216ENST00000523068 844 ntTSL 5 BASIC11.98□□□□□ -0.497e-6■■■■■ 104.3
SF3B1O75533 SCMH1-207ENST00000372597 3252 ntTSL 1 (best) BASIC10.89□□□□□ -0.673e-6■■■■■ 104.3
SF3B1O75533 SPTLC1-206ENST00000482632 837 ntTSL 510.85□□□□□ -0.674e-7■■■■■ 104.3
SF3B1O75533 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.85e-6■■■■■ 104.3
SF3B1O75533 PVT1-207ENST00000518528 624 ntTSL 39.95□□□□□ -0.827e-6■■■■■ 104.3
SF3B1O75533 SCMH1-206ENST00000372596 3323 ntTSL 1 (best) BASIC9.92□□□□□ -0.823e-6■■■■■ 104.3
SF3B1O75533 SCMH1-202ENST00000337495 3108 ntTSL 2 BASIC9.87□□□□□ -0.833e-6■■■■■ 104.3
SF3B1O75533 PVT1-205ENST00000517790 599 ntTSL 25.38□□□□□ -1.557e-6■■■■■ 104.3
SF3B1O75533 NOL10-203ENST00000431319 827 ntTSL 33.94□□□□□ -1.783e-6■■■■■ 104.3
SF3B1O75533 PACSIN2-207ENST00000422336 664 ntTSL 513.31□□□□□ -0.284e-6■■■■■ 104.3
SF3B1O75533 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.26■□□□□ 0.673e-6■■■■■ 104.2
SF3B1O75533 LRRFIP2-208ENST00000438374 560 ntTSL 417.59■□□□□ 0.414e-8■■■■■ 104.2
SF3B1O75533 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.115e-6■■■■■ 104.2
SF3B1O75533 LRRFIP2-206ENST00000434749 718 ntTSL 59.46□□□□□ -0.94e-8■■■■■ 104.2
SF3B1O75533 LRRFIP2-207ENST00000436858 389 ntTSL 59.46□□□□□ -0.94e-8■■■■■ 104.2
SF3B1O75533 LRRFIP2-211ENST00000452742 352 ntTSL 59.46□□□□□ -0.94e-8■■■■■ 104.2
SF3B1O75533 LRRFIP2-213ENST00000461672 563 ntTSL 55.15□□□□□ -1.594e-8■■■■■ 104.2
SF3B1O75533 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.414e-6■■■■■ 104.2
SF3B1O75533 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.244e-6■■■■■ 104.2
SF3B1O75533 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.194e-6■■■■■ 104.2
SF3B1O75533 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.674e-6■■■■■ 104.2
SF3B1O75533 FAM49B-225ENST00000523288 4552 ntTSL 24.08□□□□□ -1.764e-6■■■■■ 104.2
SF3B1O75533 PEAK1-209ENST00000567808 520 ntTSL 322.99■■□□□ 1.271e-6■■■■■ 104.2
SF3B1O75533 PEAK1-206ENST00000564328 2323 ntTSL 520.47■□□□□ 0.871e-6■■■■■ 104.2
SF3B1O75533 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.76□□□□□ -1.331e-6■■■■■ 104.2
SF3B1O75533 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.1■□□□□ 0.331e-6■■■■■ 104.2
SF3B1O75533 NFIA-202ENST00000371184 1348 ntTSL 5 BASIC12.49□□□□□ -0.411e-6■■■■■ 104.2
SF3B1O75533 NFIA-207ENST00000403491 9487 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.581e-6■■■■■ 104.2
SF3B1O75533 NFIA-203ENST00000371185 1714 ntTSL 5 BASIC11.07□□□□□ -0.641e-6■■■■■ 104.2
SF3B1O75533 NFIA-206ENST00000371191 1916 ntTSL 5 BASIC9.58□□□□□ -0.881e-6■■■■■ 104.2
SF3B1O75533 NFIA-212ENST00000485903 1674 ntTSL 5 BASIC9.27□□□□□ -0.921e-6■■■■■ 104.2
SF3B1O75533 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC8.7□□□□□ -1.021e-6■■■■■ 104.2
SF3B1O75533 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.8□□□□□ -1.321e-6■■■■■ 104.2
SF3B1O75533 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.332e-6■■■■■ 104.2
SF3B1O75533 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.082e-6■■■■■ 104.2
SF3B1O75533 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.032e-6■■■■■ 104.2
SF3B1O75533 TJP2-211ENST00000636247 3725 ntTSL 1 (best)13.27□□□□□ -0.292e-6■■■■■ 104.2
SF3B1O75533 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.42e-6■■■■■ 104.2
SF3B1O75533 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.422e-6■■■■■ 104.2
SF3B1O75533 MBTPS1-216ENST00000570064 3086 ntTSL 212.86□□□□□ -0.352e-6■■■■■ 104.2
SF3B1O75533 NLRP1-205ENST00000544378 5281 ntTSL 213.54□□□□□ -0.241e-6■■■■■ 104.2
SF3B1O75533 CMTR1-201ENST00000373451 4033 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.592e-6■■■■■ 104.1
SF3B1O75533 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.44■□□□□ 0.382e-6■■■■■ 104.1
SF3B1O75533 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.272e-6■■■■■ 104.1
SF3B1O75533 PPP4R3A-201ENST00000554308 2515 ntTSL 514.93□□□□□ -0.022e-6■■■■■ 104.1
SF3B1O75533 PPP4R3A-206ENST00000554943 3369 ntTSL 5 BASIC13.16□□□□□ -0.32e-6■■■■■ 104.1
SF3B1O75533 CAMKK2-210ENST00000535524 809 ntTSL 223.3■■□□□ 1.327e-6■■■■■ 104.1
SF3B1O75533 P2RX1-203ENST00000572418 2945 ntTSL 214.38□□□□□ -0.117e-6■■■■■ 104.1
SF3B1O75533 P2RX1-201ENST00000225538 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.37e-6■■■■■ 104.1
SF3B1O75533 CCDC138-205ENST00000456512 1056 ntAPPRIS ALT2 TSL 55.09□□□□□ -1.597e-7■■■■■ 104.1
SF3B1O75533 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.431e-6■■■■■ 104.1
SF3B1O75533 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.233e-6■■■■■ 104.1
SF3B1O75533 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.013e-6■■■■■ 104.1
SF3B1O75533 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.243e-6■■■■■ 104.1
SF3B1O75533 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.16■■□□□ 1.467e-7■■■■■ 104
SF3B1O75533 RBM38-201ENST00000342690 852 ntTSL 323.7■■□□□ 1.387e-7■■■■■ 104
SF3B1O75533 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.97■□□□□ 0.157e-7■■■■■ 104
SF3B1O75533 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.51□□□□□ -1.374e-6■■■■■ 104
SF3B1O75533 KIFC3-209ENST00000562311 777 ntTSL 527.86■■■□□ 2.051e-7■■■■■ 104
SF3B1O75533 ST7L-219ENST00000480988 1857 ntTSL 226.21■■□□□ 1.795e-6■■■■■ 104
SF3B1O75533 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.94■■□□□ 1.745e-6■■■■■ 104
SF3B1O75533 KIFC3-223ENST00000565684 623 ntTSL 524.85■■□□□ 1.571e-7■■■■■ 104
SF3B1O75533 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.03■■□□□ 1.445e-6■■■■■ 104
SF3B1O75533 ST7L-226ENST00000497457 1582 ntTSL 1 (best)23.06■■□□□ 1.285e-6■■■■■ 104
SF3B1O75533 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.25e-6■■■■■ 104
SF3B1O75533 KIFC3-228ENST00000566975 580 ntTSL 418.3■□□□□ 0.521e-7■■■■■ 104
SF3B1O75533 KIFC3-208ENST00000561524 577 ntTSL 418.3■□□□□ 0.521e-7■■■■■ 104
SF3B1O75533 KIFC3-210ENST00000562503 737 ntTSL 417.23■□□□□ 0.351e-7■■■■■ 104
SF3B1O75533 KIFC3-232ENST00000569112 564 ntTSL 416.9■□□□□ 0.31e-7■■■■■ 104
SF3B1O75533 KIFC3-226ENST00000566648 651 ntTSL 316.89■□□□□ 0.291e-7■■■■■ 104
SF3B1O75533 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.36■□□□□ 0.215e-6■■■■■ 104
SF3B1O75533 KIFC3-230ENST00000567204 516 ntTSL 415.56■□□□□ 0.081e-7■■■■■ 104
SF3B1O75533 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.31■□□□□ 0.045e-6■■■■■ 104
SF3B1O75533 KIFC3-212ENST00000562984 551 ntTSL 415.19■□□□□ 0.021e-7■■■■■ 104
SF3B1O75533 ST7L-204ENST00000361846 4348 ntTSL 1 (best)14.5□□□□□ -0.095e-6■■■■■ 104
SF3B1O75533 ST7L-222ENST00000490715 4483 ntTSL 1 (best)13.72□□□□□ -0.215e-6■■■■■ 104
SF3B1O75533 KIFC3-222ENST00000565481 788 ntTSL 512.82□□□□□ -0.361e-7■■■■■ 104
SF3B1O75533 ST7L-203ENST00000360743 4206 ntTSL 1 (best) BASIC11.46□□□□□ -0.585e-6■■■■■ 104
SF3B1O75533 ST7L-210ENST00000463235 2574 ntTSL 1 (best)10.45□□□□□ -0.745e-6■■■■■ 104
SF3B1O75533 ST7L-208ENST00000418497 860 ntTSL 55.12□□□□□ -1.595e-6■■■■■ 104
SF3B1O75533 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.233e-6■■■■■ 103.9
SF3B1O75533 ASPSCR1-203ENST00000344865 1041 ntTSL 224.8■■□□□ 1.564e-7■■■■■ 103.9
SF3B1O75533 ASPSCR1-209ENST00000581484 1001 ntTSL 218.86■□□□□ 0.614e-7■■■■■ 103.9
SF3B1O75533 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.121e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.091e-6■■■■■ 103.9
Retrieved 100 of 46,956 protein–RNA pairs in 1097.3 ms