RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 NISCHQ9Y2I1 1504 aa45.34■■■■■ 4.85
PVT1-220ENST00000524165 ABCC9O60706 1549 aa42.06■■■■■ 4.32
PVT1-220ENST00000524165 CCDC180Q9P1Z9 1646 aa41.21■■■■■ 4.19
PVT1-220ENST00000524165 DNAJC5BQ9UF47 199 aa40.37■■■■■ 4.05
PVT1-220ENST00000524165 RB1CC1Q8TDY2 1594 aa39.68■■■■□ 3.94
PVT1-220ENST00000524165 NACADO15069 1562 aa39.17■■■■□ 3.86
PVT1-220ENST00000524165 PABPN1Q86U42 306 aaKnown RBP eCLIP38.96■■■■□ 3.83
PVT1-220ENST00000524165 UNC13AQ9UPW8 1703 aa38.82■■■■□ 3.8
PVT1-220ENST00000524165 DCAF8L2P0C7V8 631 aa38.57■■■■□ 3.76
PVT1-220ENST00000524165 BICRAQ9NZM4 1560 aa38.55■■■■□ 3.76
PVT1-220ENST00000524165 MYO15BQ96JP2 1530 aa38.34■■■■□ 3.73
PVT1-220ENST00000524165 CECR2Q9BXF3 1484 aa38.04■■■■□ 3.68
PVT1-220ENST00000524165 CC2D2AQ9P2K1 1620 aa38.01■■■■□ 3.68
PVT1-220ENST00000524165 SHROOM4Q9ULL8 1493 aa38.01■■■■□ 3.67
PVT1-220ENST00000524165 DNAJC5Q9H3Z4 198 aa37.88■■■■□ 3.65
PVT1-220ENST00000524165 EIF4G1Q04637 1599 aaKnown RBP37.68■■■■□ 3.62
PVT1-220ENST00000524165 DCAF1Q9Y4B6 1507 aa37.45■■■■□ 3.59
PVT1-220ENST00000524165 SCRIBQ14160 1630 aa37.36■■■■□ 3.57
PVT1-220ENST00000524165 ZCCHC6Q5VYS8 1495 aaKnown RBP37.35■■■■□ 3.57
PVT1-220ENST00000524165 CUX2O14529 1486 aa36.77■■■■□ 3.48
PVT1-220ENST00000524165 ERCC6Q03468 1493 aa36.42■■■■□ 3.42
PVT1-220ENST00000524165 NCAPD3P42695 1498 aa36.16■■■■□ 3.38
PVT1-220ENST00000524165 ATAD2BQ9ULI0 1458 aa35.87■■■■□ 3.33
PVT1-220ENST00000524165 NESP48681 1621 aa35.85■■■■□ 3.33
PVT1-220ENST00000524165 HMGXB3Q12766 1538 aa35.81■■■■□ 3.32
PVT1-220ENST00000524165 THOC2Q8NI27 1593 aaKnown RBP35.76■■■■□ 3.32
PVT1-220ENST00000524165 SMARCA2P51531 1590 aa35.75■■■■□ 3.31
PVT1-220ENST00000524165 TRIM41Q8WV44 630 aa35.69■■■■□ 3.3
PVT1-220ENST00000524165 SMARCA4P51532 1647 aa35.6■■■■□ 3.29
PVT1-220ENST00000524165 LAMC3Q9Y6N6 1575 aa35.53■■■■□ 3.28
PVT1-220ENST00000524165 BAZ1BQ9UIG0 1483 aaKnown RBP35.46■■■■□ 3.27
PVT1-220ENST00000524165 KIF21AQ7Z4S6 1674 aa35.42■■■■□ 3.26
PVT1-220ENST00000524165 PDS5BQ9NTI5 1447 aa35.32■■■■□ 3.25
PVT1-220ENST00000524165 PEG3Q9GZU2 1588 aa35.31■■■■□ 3.24
PVT1-220ENST00000524165 BAZ1AQ9NRL2 1556 aaPredicted RBP35.28■■■■□ 3.24
PVT1-220ENST00000524165 MRC2Q9UBG0 1479 aa35.07■■■■□ 3.2
PVT1-220ENST00000524165 WDR62O43379 1518 aa35.05■■■■□ 3.2
PVT1-220ENST00000524165 CADPSQ9ULU8 1353 aa34.98■■■■□ 3.19
PVT1-220ENST00000524165 MROH2BQ7Z745 1585 aa34.89■■■■□ 3.18
PVT1-220ENST00000524165 OSCARQ8IYS5 282 aa34.87■■■■□ 3.17
PVT1-220ENST00000524165 CEP164Q9UPV0 1460 aa34.71■■■■□ 3.15
PVT1-220ENST00000524165 FANCD2Q9BXW9 1451 aa34.58■■■■□ 3.13
PVT1-220ENST00000524165 RIMBP3CA6NJZ7 1639 aa34.55■■■■□ 3.12
PVT1-220ENST00000524165 RIMBP3BA6NNM3 1639 aa34.55■■■■□ 3.12
PVT1-220ENST00000524165 RIMBP3Q9UFD9 1639 aa34.55■■■■□ 3.12
PVT1-220ENST00000524165 WIZO95785 1651 aa34.44■■■■□ 3.1
PVT1-220ENST00000524165 CFTRP13569 1480 aa34.39■■■■□ 3.1
PVT1-220ENST00000524165 URB2Q14146 1524 aaKnown RBP34.36■■■■□ 3.09
PVT1-220ENST00000524165 ARHGEF11O15085 1522 aa34.33■■■■□ 3.09
PVT1-220ENST00000524165 CYB5RLQ6IPT4 315 aa34.08■■■■□ 3.05
PVT1-220ENST00000524165 ZNF608Q9ULD9 1512 aaPredicted RBP34.08■■■■□ 3.05
PVT1-220ENST00000524165 IFT140Q96RY7 1462 aa34.07■■■■□ 3.05
PVT1-220ENST00000524165 PRDM2Q13029 1718 aa34.04■■■■□ 3.04
PVT1-220ENST00000524165 TRHP20396 242 aaPredicted RBP34.02■■■■□ 3.04
PVT1-220ENST00000524165 TOP2AP11388 1531 aaKnown RBP33.94■■■■□ 3.02
PVT1-220ENST00000524165 ARAP1Q96P48 1450 aa33.9■■■■□ 3.02
PVT1-220ENST00000524165 EIF4G3O43432 1585 aaKnown RBP33.89■■■■□ 3.02
PVT1-220ENST00000524165 CHD1O14646 1710 aa33.84■■■■□ 3.01
PVT1-220ENST00000524165 TOPBP1Q92547 1522 aa33.82■■■■□ 3
PVT1-220ENST00000524165 AEBP2Q6ZN18 517 aaPredicted RBP33.81■■■■□ 3
PVT1-220ENST00000524165 RSF1Q96T23 1441 aaPredicted RBP33.8■■■■□ 3
PVT1-220ENST00000524165 ABCC8Q09428 1581 aa33.73■■■□□ 2.99
PVT1-220ENST00000524165 AQRO60306 1485 aaKnown RBP eCLIP33.63■■■□□ 2.97
PVT1-220ENST00000524165 TARBP1Q13395 1621 aaKnown RBP33.63■■■□□ 2.97
PVT1-220ENST00000524165 DNMBPQ6XZF7 1577 aa33.62■■■□□ 2.97
PVT1-220ENST00000524165 FBLN2P98095 1184 aa33.58■■■□□ 2.97
PVT1-220ENST00000524165 CCDC88BA6NC98 1476 aa33.54■■■□□ 2.96
PVT1-220ENST00000524165 CLASP1Q7Z460 1538 aa33.43■■■□□ 2.94
PVT1-220ENST00000524165 POLA1P09884 1462 aaPredicted RBP33.4■■■□□ 2.94
PVT1-220ENST00000524165 SYNJ1O43426 1573 aa33.32■■■□□ 2.92
PVT1-220ENST00000524165 WDR97A6NE52 1622 aa33.28■■■□□ 2.92
PVT1-220ENST00000524165 SNAPC4Q5SXM2 1469 aa33.27■■■□□ 2.92
PVT1-220ENST00000524165 RAD54L2Q9Y4B4 1467 aa33.25■■■□□ 2.91
PVT1-220ENST00000524165 TDRD9Q8NDG6 1382 aaKnown RBP33.25■■■□□ 2.91
PVT1-220ENST00000524165 SOGA1O94964 1423 aa33.22■■■□□ 2.91
PVT1-220ENST00000524165 CHMP7Q8WUX9 453 aaPredicted RBP33.21■■■□□ 2.91
PVT1-220ENST00000524165 MAGI1Q96QZ7 1491 aaPredicted RBP33.2■■■□□ 2.91
PVT1-220ENST00000524165 GAPVD1Q14C86 1478 aa33.12■■■□□ 2.89
PVT1-220ENST00000524165 SYNJ2O15056 1496 aa33.09■■■□□ 2.89
PVT1-220ENST00000524165 GRIN2BQ13224 1484 aa33.07■■■□□ 2.88
PVT1-220ENST00000524165 FGD5Q6ZNL6 1462 aa33.03■■■□□ 2.88
PVT1-220ENST00000524165 PBRM1Q86U86 1689 aa32.91■■■□□ 2.86
PVT1-220ENST00000524165 CUX1P39880 1505 aa32.84■■■□□ 2.85
PVT1-220ENST00000524165 ERCC6L2Q5T890 1561 aa32.78■■■□□ 2.84
PVT1-220ENST00000524165 KIF13AQ9H1H9 1805 aa32.74■■■□□ 2.83
PVT1-220ENST00000524165 ABCA5Q8WWZ7 1642 aa32.69■■■□□ 2.82
PVT1-220ENST00000524165 CEP170Q5SW79 1584 aa32.67■■■□□ 2.82
PVT1-220ENST00000524165 GRIN2AQ12879 1464 aa32.64■■■□□ 2.82
PVT1-220ENST00000524165 ABCA10Q8WWZ4 1543 aa32.63■■■□□ 2.81
PVT1-220ENST00000524165 SHROOM2Q13796 1616 aa32.6■■■□□ 2.81
PVT1-220ENST00000524165 NUP160Q12769 1436 aa32.59■■■□□ 2.81
PVT1-220ENST00000524165 ADAMTS12P58397 1594 aa32.5■■■□□ 2.79
PVT1-220ENST00000524165 ILDR1Q86SU0 546 aaPredicted RBP32.45■■■□□ 2.79
PVT1-220ENST00000524165 ABCC10Q5T3U5 1492 aa32.41■■■□□ 2.78
PVT1-220ENST00000524165 KDM4FA0A1W2PPD8 638 aa32.38■■■□□ 2.77
PVT1-220ENST00000524165 FHAD1B1AJZ9 1412 aa32.36■■■□□ 2.77
PVT1-220ENST00000524165 FAM69CQ0P6D2 419 aa32.36■■■□□ 2.77
PVT1-220ENST00000524165 PRG4Q92954 1404 aaPredicted RBP32.32■■■□□ 2.76
PVT1-220ENST00000524165 MAPKBP1O60336 1514 aa32.31■■■□□ 2.76
PVT1-220ENST00000524165 DIP2BQ9P265 1576 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms