Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 Z92544.3-201ENST00000624747 417 ntBASIC15.71■□□□□ 0.11
VPS4AQ9UN37 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS4AQ9UN37 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4AQ9UN37 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
VPS4AQ9UN37 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS4AQ9UN37 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.71■□□□□ 0.1
VPS4AQ9UN37 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AC129492.6-201ENST00000611383 1305 ntBASIC15.7■□□□□ 0.1
VPS4AQ9UN37 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 TERF1P3-201ENST00000505638 1227 ntBASIC15.7■□□□□ 0.1
VPS4AQ9UN37 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
VPS4AQ9UN37 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AC092902.6-201ENST00000641783 218 ntBASIC15.7■□□□□ 0.1
VPS4AQ9UN37 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS4AQ9UN37 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AC022145.2-201ENST00000598203 171 ntBASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 AC068587.6-202ENST00000641839 5619 ntBASIC15.69■□□□□ 0.1
VPS4AQ9UN37 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS4AQ9UN37 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS4AQ9UN37 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms