Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TRIM38O00635 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM38O00635 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM38O00635 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TRIM38O00635 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM38O00635 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 FAM207CP-201ENST00000443486 507 ntBASIC16.29■□□□□ 0.2
TRIM38O00635 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM38O00635 AC104640.1-201ENST00000562617 2109 ntBASIC16.29■□□□□ 0.2
TRIM38O00635 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.29■□□□□ 0.2
TRIM38O00635 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TRIM38O00635 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM38O00635 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM38O00635 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM38O00635 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 TUBB8P12-201ENST00000308911 1335 ntBASIC16.28■□□□□ 0.2
TRIM38O00635 TUBB7P-202ENST00000428444 1305 ntBASIC16.28■□□□□ 0.2
TRIM38O00635 TUBB8P7-204ENST00000567960 1332 ntBASIC16.28■□□□□ 0.2
TRIM38O00635 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM38O00635 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM38O00635 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM38O00635 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM38O00635 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM38O00635 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
TRIM38O00635 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM38O00635 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM38O00635 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM38O00635 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM38O00635 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 ME2P1-201ENST00000426028 1970 ntBASIC16.27■□□□□ 0.2
TRIM38O00635 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
TRIM38O00635 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.27■□□□□ 0.2
TRIM38O00635 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.27■□□□□ 0.2
TRIM38O00635 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 1689.4 ms