Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 AP002803.1-201ENST00000528836 498 ntBASIC11.36□□□□□ -0.59
PRKDCP78527 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC11.36□□□□□ -0.59
PRKDCP78527 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 AC051619.9-201ENST00000623237 597 ntBASIC11.36□□□□□ -0.59
PRKDCP78527 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC11.36□□□□□ -0.59
PRKDCP78527 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 BICD1-207ENST00000551848 1962 ntBASIC11.36□□□□□ -0.59
PRKDCP78527 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
PRKDCP78527 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC11.36□□□□□ -0.59
PRKDCP78527 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 AL357373.1-201ENST00000394974 322 ntBASIC11.36□□□□□ -0.59
PRKDCP78527 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC11.36□□□□□ -0.59
PRKDCP78527 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
PRKDCP78527 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 RPS9P1-201ENST00000419943 583 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 USP40-206ENST00000443711 628 ntTSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC104073.2-201ENST00000453737 312 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC11.35□□□□□ -0.59
PRKDCP78527 PAM16-215ENST00000577031 548 ntTSL 4 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC068587.8-201ENST00000641239 219 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 AMT-206ENST00000458307 1860 ntTSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC11.35□□□□□ -0.59
PRKDCP78527 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 AL162426.1-201ENST00000624141 743 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 PCBP2-OT1-201ENST00000634357 590 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC11.35□□□□□ -0.59
PRKDCP78527 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 SLC16A6P1-201ENST00000413214 1059 ntBASIC11.35□□□□□ -0.59
PRKDCP78527 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 RGS5-214ENST00000429865 754 ntTSL 3 BASIC11.35□□□□□ -0.59
PRKDCP78527 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
PRKDCP78527 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC11.35□□□□□ -0.59
PRKDCP78527 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC11.34□□□□□ -0.59
PRKDCP78527 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 MIR6858-201ENST00000620733 67 ntBASIC11.34□□□□□ -0.59
PRKDCP78527 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 VILL-207ENST00000465644 1857 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC11.34□□□□□ -0.59
PRKDCP78527 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 UROS-201ENST00000368774 744 ntTSL 2 BASIC11.34□□□□□ -0.59
PRKDCP78527 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
PRKDCP78527 NPPA-201ENST00000376476 728 ntTSL 3 BASIC11.34□□□□□ -0.59
PRKDCP78527 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.34□□□□□ -0.59
PRKDCP78527 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms