Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.91■□□□□ 0.3
HDAC4P56524 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
HDAC4P56524 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC4P56524 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.9■□□□□ 0.3
HDAC4P56524 GPS2P2-201ENST00000430745 888 ntBASIC16.9■□□□□ 0.3
HDAC4P56524 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
HDAC4P56524 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.9■□□□□ 0.3
HDAC4P56524 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.9■□□□□ 0.3
HDAC4P56524 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.9■□□□□ 0.3
HDAC4P56524 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.9■□□□□ 0.3
HDAC4P56524 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.9■□□□□ 0.3
HDAC4P56524 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.9■□□□□ 0.3
HDAC4P56524 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HDAC4P56524 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
HDAC4P56524 AP3S2-216ENST00000617003 1561 ntBASIC16.89■□□□□ 0.3
HDAC4P56524 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HDAC4P56524 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
HDAC4P56524 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HDAC4P56524 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 HLA-H-201ENST00000383620 1096 ntBASIC16.89■□□□□ 0.29
HDAC4P56524 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 KRT18P32-201ENST00000424695 1287 ntBASIC16.89■□□□□ 0.29
HDAC4P56524 AC004967.1-201ENST00000453589 447 ntBASIC16.89■□□□□ 0.29
HDAC4P56524 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.89■□□□□ 0.29
HDAC4P56524 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.89■□□□□ 0.29
HDAC4P56524 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.89■□□□□ 0.29
HDAC4P56524 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 AC004835.2-201ENST00000603762 682 ntBASIC16.89■□□□□ 0.29
HDAC4P56524 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.89■□□□□ 0.29
HDAC4P56524 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.89■□□□□ 0.29
HDAC4P56524 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
HDAC4P56524 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.89■□□□□ 0.29
HDAC4P56524 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HDAC4P56524 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDAC4P56524 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.88■□□□□ 0.29
HDAC4P56524 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
HDAC4P56524 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.88■□□□□ 0.29
HDAC4P56524 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
HDAC4P56524 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.88■□□□□ 0.29
HDAC4P56524 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 C8orf49-201ENST00000525043 1968 ntBASIC16.88■□□□□ 0.29
HDAC4P56524 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDAC4P56524 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.88■□□□□ 0.29
HDAC4P56524 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms