Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 NUP210P1-202ENST00000504322 710 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC126915.1-201ENST00000522847 1038 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PRKXP1-201ENST00000561423 1122 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 MIR769-201ENST00000390225 118 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 AC141586.1-203ENST00000567242 366 ntBASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS13AQ96RL7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AL139384.1-201ENST00000612143 3047 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 MIR1227-201ENST00000408484 88 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CD8B2-202ENST00000417670 633 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AL590640.2-201ENST00000457038 527 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 VDAC1P7-201ENST00000462417 847 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AL353726.2-201ENST00000623259 884 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CU633904.3-201ENST00000624042 1029 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 FAM197Y7-201ENST00000432892 766 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 COX6A1P2-201ENST00000620597 330 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 AP003680.1-201ENST00000598970 3660 ntBASIC15.68■□□□□ 0.1
VPS13AQ96RL7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC15.68■□□□□ 0.1
VPS13AQ96RL7 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 RN7SL181P-201ENST00000462921 277 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AC005357.2-202ENST00000590507 1060 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 MIR1202-201ENST00000408529 83 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 CEP164P1-201ENST00000455142 418 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AL138709.1-201ENST00000614840 1693 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms