Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CDX1P47902 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CDX1P47902 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CDX1P47902 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.3□□□□□ -0.28
CDX1P47902 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CDX1P47902 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 BX842568.4-201ENST00000421222 227 ntBASIC13.3□□□□□ -0.28
CDX1P47902 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.3□□□□□ -0.28
CDX1P47902 HCG4B-203ENST00000450128 991 ntBASIC13.3□□□□□ -0.28
CDX1P47902 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.3□□□□□ -0.28
CDX1P47902 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.3□□□□□ -0.28
CDX1P47902 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.3□□□□□ -0.28
CDX1P47902 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.3□□□□□ -0.28
CDX1P47902 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 AL359183.1-201ENST00000623796 2132 ntBASIC13.3□□□□□ -0.28
CDX1P47902 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CDX1P47902 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CDX1P47902 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CDX1P47902 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CDX1P47902 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CDX1P47902 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.29□□□□□ -0.28
CDX1P47902 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 AC004832.2-201ENST00000426397 482 ntBASIC13.29□□□□□ -0.28
CDX1P47902 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 PAWRP1-201ENST00000451083 565 ntBASIC13.29□□□□□ -0.28
CDX1P47902 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 AC092865.5-201ENST00000545435 363 ntBASIC13.29□□□□□ -0.28
CDX1P47902 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.29□□□□□ -0.28
CDX1P47902 AC002347.1-201ENST00000569543 541 ntBASIC13.29□□□□□ -0.28
CDX1P47902 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CDX1P47902 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.29□□□□□ -0.28
CDX1P47902 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CDX1P47902 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
CDX1P47902 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CDX1P47902 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CDX1P47902 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms