Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 NOC2LP2-201ENST00000407594 1944 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ABALON-201ENST00000629058 1903 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SSH2-210ENST00000582084 560 ntTSL 3 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AL645728.2-201ENST00000641974 660 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 TNRC18P3-201ENST00000441896 2691 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SYNE1Q8NF91 FLJ13224-201ENST00000313737 1514 ntBASIC5.05□□□□□ -1.6
SYNE1Q8NF91 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 BOC-212ENST00000485230 2173 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AKAP8P1-201ENST00000434743 1349 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 YTHDF3-AS1-201ENST00000603538 718 ntBASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SYNE1Q8NF91 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms