Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC009831.1-201ENST00000580420 1582 ntBASIC21.02■□□□□ 0.96
VSX1Q9NZR4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.02■□□□□ 0.96
VSX1Q9NZR4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VSX1Q9NZR4 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VSX1Q9NZR4 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VSX1Q9NZR4 MIR6089-201ENST00000616698 64 ntBASIC21.02■□□□□ 0.96
VSX1Q9NZR4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VSX1Q9NZR4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VSX1Q9NZR4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21■□□□□ 0.95
VSX1Q9NZR4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21■□□□□ 0.95
VSX1Q9NZR4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VSX1Q9NZR4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 AC133552.2-201ENST00000619106 1032 ntBASIC20.99■□□□□ 0.95
VSX1Q9NZR4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.99■□□□□ 0.95
VSX1Q9NZR4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
VSX1Q9NZR4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 LINC01124-201ENST00000409786 2117 ntBASIC20.97■□□□□ 0.95
VSX1Q9NZR4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VSX1Q9NZR4 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.96■□□□□ 0.95
VSX1Q9NZR4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VSX1Q9NZR4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VSX1Q9NZR4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
VSX1Q9NZR4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VSX1Q9NZR4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VSX1Q9NZR4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 FOXO3B-201ENST00000395675 1928 ntBASIC20.93■□□□□ 0.94
VSX1Q9NZR4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VSX1Q9NZR4 LINC00543-201ENST00000567234 1845 ntBASIC20.92■□□□□ 0.94
VSX1Q9NZR4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VSX1Q9NZR4 AC141586.4-201ENST00000624558 1573 ntBASIC20.92■□□□□ 0.94
VSX1Q9NZR4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VSX1Q9NZR4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms