Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
TM9SF3Q9HD45 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
TM9SF3Q9HD45 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
TM9SF3Q9HD45 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
TM9SF3Q9HD45 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.64■■□□□ 1.37
TM9SF3Q9HD45 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.37
TM9SF3Q9HD45 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.64■■□□□ 1.37
TM9SF3Q9HD45 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
TM9SF3Q9HD45 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 MIR4281-201ENST00000580852 62 ntBASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TM9SF3Q9HD45 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 AC092028.1-203ENST00000608262 953 ntBASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TM9SF3Q9HD45 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TM9SF3Q9HD45 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
TM9SF3Q9HD45 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.6■■□□□ 1.37
TM9SF3Q9HD45 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TM9SF3Q9HD45 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.6■■□□□ 1.37
TM9SF3Q9HD45 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TM9SF3Q9HD45 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TM9SF3Q9HD45 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TM9SF3Q9HD45 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TM9SF3Q9HD45 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
TM9SF3Q9HD45 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
TM9SF3Q9HD45 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.58■■□□□ 1.36
TM9SF3Q9HD45 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
TM9SF3Q9HD45 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.56■■□□□ 1.36
TM9SF3Q9HD45 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
TM9SF3Q9HD45 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TM9SF3Q9HD45 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.56■■□□□ 1.36
TM9SF3Q9HD45 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TM9SF3Q9HD45 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.55■■□□□ 1.36
TM9SF3Q9HD45 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TM9SF3Q9HD45 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TM9SF3Q9HD45 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
TM9SF3Q9HD45 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TM9SF3Q9HD45 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.54■■□□□ 1.36
TM9SF3Q9HD45 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
TM9SF3Q9HD45 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.52■■□□□ 1.36
TM9SF3Q9HD45 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.52■■□□□ 1.36
TM9SF3Q9HD45 AC011551.1-201ENST00000614101 683 ntBASIC23.52■■□□□ 1.36
TM9SF3Q9HD45 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.52■■□□□ 1.36
TM9SF3Q9HD45 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
TM9SF3Q9HD45 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
TM9SF3Q9HD45 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms