Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 ABHD17AP4-201ENST00000411545 909 ntBASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CHMP1AQ9HD42 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 MIR3648-2-201ENST00000581792 180 ntBASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 MIR3648-1-201ENST00000615959 180 ntBASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP1AQ9HD42 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CHMP1AQ9HD42 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.08■□□□□ 0.81
CHMP1AQ9HD42 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHMP1AQ9HD42 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.08■□□□□ 0.81
CHMP1AQ9HD42 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.08■□□□□ 0.81
CHMP1AQ9HD42 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.08■□□□□ 0.81
CHMP1AQ9HD42 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 AC016575.1-201ENST00000607026 382 ntBASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP1AQ9HD42 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 AC097639.1-201ENST00000565519 1891 ntBASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP1AQ9HD42 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP1AQ9HD42 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CHMP1AQ9HD42 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP1AQ9HD42 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP1AQ9HD42 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms