Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
RPAP1Q9BWH6 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 AC096887.2-201ENST00000623443 1957 ntBASIC28.81■■■□□ 2.2
RPAP1Q9BWH6 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
RPAP1Q9BWH6 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.8■■■□□ 2.2
RPAP1Q9BWH6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC28.8■■■□□ 2.2
RPAP1Q9BWH6 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
RPAP1Q9BWH6 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 AC022616.5-201ENST00000518796 181 ntBASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
RPAP1Q9BWH6 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.77■■■□□ 2.2
RPAP1Q9BWH6 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
RPAP1Q9BWH6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
RPAP1Q9BWH6 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
RPAP1Q9BWH6 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
RPAP1Q9BWH6 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.76■■■□□ 2.2
RPAP1Q9BWH6 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.76■■■□□ 2.2
RPAP1Q9BWH6 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.2
RPAP1Q9BWH6 AC239859.2-201ENST00000444165 318 ntBASIC28.76■■■□□ 2.2
RPAP1Q9BWH6 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.76■■■□□ 2.2
RPAP1Q9BWH6 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.75■■■□□ 2.19
RPAP1Q9BWH6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
RPAP1Q9BWH6 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
RPAP1Q9BWH6 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
RPAP1Q9BWH6 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
RPAP1Q9BWH6 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
RPAP1Q9BWH6 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
RPAP1Q9BWH6 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
RPAP1Q9BWH6 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.72■■■□□ 2.19
RPAP1Q9BWH6 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RPAP1Q9BWH6 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.71■■■□□ 2.19
RPAP1Q9BWH6 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
RPAP1Q9BWH6 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.7■■■□□ 2.19
RPAP1Q9BWH6 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.7■■■□□ 2.19
RPAP1Q9BWH6 AC019069.1-201ENST00000610008 1333 ntBASIC28.7■■■□□ 2.19
RPAP1Q9BWH6 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.7■■■□□ 2.19
RPAP1Q9BWH6 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.7■■■□□ 2.18
RPAP1Q9BWH6 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RPAP1Q9BWH6 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
RPAP1Q9BWH6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.7■■■□□ 2.18
RPAP1Q9BWH6 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RPAP1Q9BWH6 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
RPAP1Q9BWH6 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.68■■■□□ 2.18
RPAP1Q9BWH6 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.68■■■□□ 2.18
RPAP1Q9BWH6 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
RPAP1Q9BWH6 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
RPAP1Q9BWH6 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
RPAP1Q9BWH6 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.66■■■□□ 2.18
RPAP1Q9BWH6 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.66■■■□□ 2.18
RPAP1Q9BWH6 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 BX664725.1-201ENST00000438252 379 ntBASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.65■■■□□ 2.18
RPAP1Q9BWH6 KRT18P24-201ENST00000344739 1156 ntBASIC28.64■■■□□ 2.18
RPAP1Q9BWH6 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
RPAP1Q9BWH6 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.64■■■□□ 2.18
RPAP1Q9BWH6 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RPAP1Q9BWH6 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RPAP1Q9BWH6 KRT125P-201ENST00000546827 989 ntBASIC28.63■■■□□ 2.17
RPAP1Q9BWH6 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.63■■■□□ 2.17
RPAP1Q9BWH6 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms