Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 PDK1-201ENST00000282077 14193 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.341e-8■■■■□ 21.8
XRCC6P12956 PDK1-204ENST00000416991 699 ntTSL 55.33□□□□□ -1.561e-8■■■■□ 21.8
XRCC6P12956 RNY4-201ENST00000516507 96 ntBASIC-2.52□□□□□ -2.811e-8■■■■□ 21.8
XRCC6P12956 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.12e-7■■■■□ 21.8
XRCC6P12956 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.762e-7■■■■□ 21.8
XRCC6P12956 TMEM2-210ENST00000542935 5372 ntTSL 1 (best)9.11□□□□□ -0.952e-7■■■■□ 21.8
XRCC6P12956 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.286e-26■■■■□ 21.8
XRCC6P12956 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.236e-26■■■■□ 21.8
XRCC6P12956 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.046e-26■■■■□ 21.8
XRCC6P12956 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.91■□□□□ 0.946e-26■■■■□ 21.8
XRCC6P12956 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.33■□□□□ 0.856e-26■■■■□ 21.8
XRCC6P12956 RNPS1-217ENST00000565870 1514 ntTSL 1 (best)19.89■□□□□ 0.776e-26■■■■□ 21.8
XRCC6P12956 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.82■□□□□ 0.766e-26■■■■□ 21.8
XRCC6P12956 RNPS1-204ENST00000561518 1092 ntTSL 519.48■□□□□ 0.716e-26■■■■□ 21.8
XRCC6P12956 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.47■□□□□ 0.716e-26■■■■□ 21.8
XRCC6P12956 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.89■□□□□ 0.616e-26■■■■□ 21.8
XRCC6P12956 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.546e-26■■■■□ 21.8
XRCC6P12956 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.486e-26■■■■□ 21.8
XRCC6P12956 RNPS1-209ENST00000564311 870 ntTSL 517.18■□□□□ 0.346e-26■■■■□ 21.8
XRCC6P12956 RNPS1-213ENST00000565243 3337 ntTSL 215.35■□□□□ 0.056e-26■■■■□ 21.8
XRCC6P12956 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.7□□□□□ -1.348e-7■■■■□ 21.7
XRCC6P12956 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.573e-6■■■■□ 21.6
XRCC6P12956 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.655e-6■■■■□ 21.6
XRCC6P12956 FUBP3-202ENST00000465949 676 ntTSL 54.98□□□□□ -1.615e-6■■■■□ 21.6
XRCC6P12956 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.772e-6■■■■□ 21.5
XRCC6P12956 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC9.68□□□□□ -0.865e-12■■■■□ 21.5
XRCC6P12956 SETD5-202ENST00000399686 3362 ntTSL 59.41□□□□□ -0.95e-12■■■■□ 21.5
XRCC6P12956 HIVEP1-203ENST00000442081 1044 ntTSL 322.28■■□□□ 1.162e-6■■■■□ 21.5
XRCC6P12956 HIVEP1-209ENST00000627968 8924 ntTSL 5 BASIC13.05□□□□□ -0.322e-6■■■■□ 21.5
XRCC6P12956 HIVEP1-208ENST00000541134 9023 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.332e-6■■■■□ 21.5
XRCC6P12956 HIVEP1-201ENST00000379388 9027 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.332e-6■■■■□ 21.5
XRCC6P12956 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC25.37■■□□□ 1.655e-6■■■■□ 21.5
XRCC6P12956 STARD3-229ENST00000585269 1346 ntTSL 525.25■■□□□ 1.635e-6■■■■□ 21.5
XRCC6P12956 STARD3-214ENST00000578577 1511 ntTSL 223.63■■□□□ 1.375e-6■■■■□ 21.5
XRCC6P12956 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC23.52■■□□□ 1.365e-6■■■■□ 21.5
XRCC6P12956 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.345e-6■■■■□ 21.5
XRCC6P12956 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.54■■□□□ 1.045e-6■■■■□ 21.5
XRCC6P12956 STARD3-223ENST00000583582 1350 ntTSL 220.7■□□□□ 0.95e-6■■■■□ 21.5
XRCC6P12956 STARD3-227ENST00000584850 2442 ntTSL 219.01■□□□□ 0.635e-6■■■■□ 21.5
XRCC6P12956 STARD3-203ENST00000443521 673 ntTSL 518.64■□□□□ 0.575e-6■■■■□ 21.5
XRCC6P12956 STARD3-207ENST00000484773 916 ntTSL 318.47■□□□□ 0.555e-6■■■■□ 21.5
XRCC6P12956 STARD3-208ENST00000488876 2404 ntTSL 218.18■□□□□ 0.55e-6■■■■□ 21.5
XRCC6P12956 STARD3-221ENST00000582874 591 ntTSL 317.93■□□□□ 0.465e-6■■■■□ 21.5
XRCC6P12956 STARD3-211ENST00000578232 851 ntTSL 217.04■□□□□ 0.325e-6■■■■□ 21.5
XRCC6P12956 STARD3-206ENST00000481171 3451 ntTSL 213.29□□□□□ -0.285e-6■■■■□ 21.5
XRCC6P12956 PFKL-210ENST00000496824 1063 ntTSL 521.72■■□□□ 1.076e-7■■■■□ 21.4
XRCC6P12956 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.72■■□□□ 1.552e-13■■■■□ 21.2
XRCC6P12956 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.652e-13■■■■□ 21.2
XRCC6P12956 SRRM2-220ENST00000574593 1440 ntTSL 317.55■□□□□ 0.42e-13■■■■□ 21.2
XRCC6P12956 SRRM2-213ENST00000573311 732 ntTSL 216.66■□□□□ 0.262e-13■■■■□ 21.2
XRCC6P12956 SRRM2-210ENST00000572721 841 ntTSL 215.58■□□□□ 0.082e-13■■■■□ 21.2
XRCC6P12956 SRRM2-211ENST00000572883 887 ntTSL 212.03□□□□□ -0.482e-13■■■■□ 21.2
XRCC6P12956 CDYL-207ENST00000472453 1764 ntTSL 1 (best)29.25■■■□□ 2.277e-9■■■■□ 21.1
XRCC6P12956 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.097e-9■■■■□ 21.1
XRCC6P12956 CDYL-201ENST00000328908 3419 ntTSL 1 (best) BASIC12.75□□□□□ -0.377e-9■■■■□ 21.1
XRCC6P12956 CDYL-208ENST00000483019 773 ntTSL 210.66□□□□□ -0.77e-9■■■■□ 21.1
XRCC6P12956 CDYL-204ENST00000440139 690 ntTSL 39□□□□□ -0.977e-9■■■■□ 21.1
XRCC6P12956 CDYL-209ENST00000491864 614 ntTSL 57.45□□□□□ -1.227e-9■■■■□ 21.1
XRCC6P12956 FNDC3B-207ENST00000469491 2916 ntTSL 220.16■□□□□ 0.821e-6■■■■□ 21
XRCC6P12956 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.21e-6■■■■□ 21
XRCC6P12956 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.771e-6■■■■□ 21
XRCC6P12956 VPS13D-201ENST00000011700 10969 ntTSL 1 (best)6.63□□□□□ -1.353e-6■■■■□ 20.9
XRCC6P12956 LIMD1-AS1-202ENST00000429798 955 ntTSL 1 (best)11.43□□□□□ -0.584e-73■■■■□ 20.9
XRCC6P12956 RPL4-211ENST00000566491 593 ntTSL 214.08□□□□□ -0.161e-14■■■■□ 20.9
XRCC6P12956 RPL4-202ENST00000561554 580 ntTSL 411.98□□□□□ -0.491e-14■■■■□ 20.9
XRCC6P12956 RPL4-213ENST00000566624 819 ntTSL 211.68□□□□□ -0.541e-14■■■■□ 20.9
XRCC6P12956 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.93e-7■■■■□ 20.8
XRCC6P12956 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC11.61□□□□□ -0.554e-9■■■■□ 20.7
XRCC6P12956 MTA1-209ENST00000469140 1666 ntTSL 526.3■■□□□ 1.84e-8■■■■□ 20.7
XRCC6P12956 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC23.81■■□□□ 1.44e-8■■■■□ 20.7
XRCC6P12956 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC23.34■■□□□ 1.334e-8■■■■□ 20.7
XRCC6P12956 MTA1-220ENST00000552286 1943 ntTSL 223.21■■□□□ 1.314e-8■■■■□ 20.7
XRCC6P12956 MTA1-208ENST00000438610 2144 ntTSL 1 (best)21.23■□□□□ 0.994e-8■■■■□ 20.7
XRCC6P12956 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC21.05■□□□□ 0.964e-8■■■■□ 20.7
XRCC6P12956 MTA1-206ENST00000434050 2050 ntTSL 1 (best)20.73■□□□□ 0.914e-8■■■■□ 20.7
XRCC6P12956 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC20.28■□□□□ 0.844e-8■■■■□ 20.7
XRCC6P12956 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.774e-8■■■■□ 20.7
XRCC6P12956 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.684e-8■■■■□ 20.7
XRCC6P12956 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.11■□□□□ 0.334e-8■■■■□ 20.7
XRCC6P12956 POLE-208ENST00000535934 1561 ntTSL 516.38■□□□□ 0.214e-8■■■■□ 20.7
XRCC6P12956 POLE-207ENST00000535270 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.224e-8■■■■□ 20.7
XRCC6P12956 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.234e-8■■■■□ 20.7
XRCC6P12956 POLE-210ENST00000537064 8011 ntTSL 1 (best)12.89□□□□□ -0.354e-8■■■■□ 20.7
XRCC6P12956 DYRK1A-204ENST00000398960 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.424e-8■■■■□ 20.7
XRCC6P12956 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.254e-8■■■■□ 20.7
XRCC6P12956 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.33□□□□□ -1.44e-8■■■■□ 20.7
XRCC6P12956 ZNF638-225ENST00000494241 703 ntTSL 35.2□□□□□ -1.584e-8■■■■□ 20.7
XRCC6P12956 ZNF638-217ENST00000483421 2076 ntTSL 25.04□□□□□ -1.64e-8■■■■□ 20.7
XRCC6P12956 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.614e-8■■■■□ 20.7
XRCC6P12956 ZNF638-202ENST00000409407 4470 ntTSL 22.64□□□□□ -1.994e-8■■■■□ 20.7
XRCC6P12956 ZNF638-219ENST00000487638 4233 ntTSL 1 (best)2.58□□□□□ -24e-8■■■■□ 20.7
XRCC6P12956 GAK-209ENST00000507580 468 ntTSL 423.5■■□□□ 1.355e-17■■■■□ 20.6
XRCC6P12956 GAK-207ENST00000505819 1326 ntTSL 523.4■■□□□ 1.345e-17■■■■□ 20.6
XRCC6P12956 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.21■□□□□ 0.515e-17■■■■□ 20.6
XRCC6P12956 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.415e-17■■■■□ 20.6
XRCC6P12956 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.3■□□□□ 0.365e-17■■■■□ 20.6
XRCC6P12956 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.19□□□□□ -1.422e-13■■■■□ 20.6
XRCC6P12956 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.036e-7■■■■□ 20.4
XRCC6P12956 CTSZ-204ENST00000503833 955 ntTSL 1 (best)24.65■■□□□ 1.546e-7■■■■□ 20.4
XRCC6P12956 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.97■■□□□ 1.116e-7■■■■□ 20.4
Retrieved 100 of 6,788 protein–RNA pairs in 107.7 ms