Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.21■■□□□ 1.31
TRIM13O60858 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.21■■□□□ 1.31
TRIM13O60858 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.21■■□□□ 1.31
TRIM13O60858 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TRIM13O60858 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRIM13O60858 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRIM13O60858 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TRIM13O60858 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.2■■□□□ 1.3
TRIM13O60858 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.2■■□□□ 1.3
TRIM13O60858 MIR3960-201ENST00000583311 91 ntBASIC23.2■■□□□ 1.3
TRIM13O60858 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TRIM13O60858 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TRIM13O60858 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.19■■□□□ 1.3
TRIM13O60858 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.19■■□□□ 1.3
TRIM13O60858 AC016575.1-201ENST00000607026 382 ntBASIC23.19■■□□□ 1.3
TRIM13O60858 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.19■■□□□ 1.3
TRIM13O60858 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.19■■□□□ 1.3
TRIM13O60858 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
TRIM13O60858 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.19■■□□□ 1.3
TRIM13O60858 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRIM13O60858 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
TRIM13O60858 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.17■■□□□ 1.3
TRIM13O60858 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
TRIM13O60858 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.17■■□□□ 1.3
TRIM13O60858 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRIM13O60858 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRIM13O60858 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.16■■□□□ 1.3
TRIM13O60858 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRIM13O60858 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TRIM13O60858 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRIM13O60858 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
TRIM13O60858 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TRIM13O60858 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
TRIM13O60858 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.16■■□□□ 1.3
TRIM13O60858 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
TRIM13O60858 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRIM13O60858 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRIM13O60858 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TRIM13O60858 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRIM13O60858 MIR6089-201ENST00000616698 64 ntBASIC23.15■■□□□ 1.3
TRIM13O60858 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.14■■□□□ 1.3
TRIM13O60858 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
TRIM13O60858 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 SMPD5-203ENST00000639008 1464 ntBASIC23.14■■□□□ 1.29
TRIM13O60858 AC060814.1-201ENST00000554326 538 ntBASIC23.14■■□□□ 1.29
TRIM13O60858 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.14■■□□□ 1.29
TRIM13O60858 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.14■■□□□ 1.29
TRIM13O60858 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRIM13O60858 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRIM13O60858 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TRIM13O60858 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRIM13O60858 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRIM13O60858 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.13■■□□□ 1.29
TRIM13O60858 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRIM13O60858 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.12■■□□□ 1.29
TRIM13O60858 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRIM13O60858 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRIM13O60858 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRIM13O60858 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
TRIM13O60858 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.12■■□□□ 1.29
TRIM13O60858 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRIM13O60858 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.12■■□□□ 1.29
TRIM13O60858 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
TRIM13O60858 AC004812.2-201ENST00000611079 2094 ntBASIC23.12■■□□□ 1.29
TRIM13O60858 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRIM13O60858 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.12■■□□□ 1.29
TRIM13O60858 AC133561.1-201ENST00000568600 2415 ntBASIC23.11■■□□□ 1.29
TRIM13O60858 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM13O60858 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM13O60858 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM13O60858 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TRIM13O60858 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.11■■□□□ 1.29
TRIM13O60858 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM13O60858 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.1■■□□□ 1.29
TRIM13O60858 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TRIM13O60858 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
TRIM13O60858 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
TRIM13O60858 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.1■■□□□ 1.29
TRIM13O60858 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.1■■□□□ 1.29
TRIM13O60858 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.1■■□□□ 1.29
TRIM13O60858 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.09■■□□□ 1.29
TRIM13O60858 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
TRIM13O60858 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms